Gene detail information of Glyur000328s00018320.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G21105.1 | 0 | Plant L-ascorbate oxidase |
| NR | XP_006595804.1 | 0 | PREDICTED: L-ascorbate oxidase-like [Glycine max] |
| COG | YP_003290660.1 | 4.00E-31 | multicopper oxidase type 3 [Rhodothermus marinus DSM 4252] |
| Swissprot | tr|Q40588|ASO_TOBAC | 0 | L-ascorbate oxidase (Precursor) |
| trEMBL | tr|I1M7A4|I1M7A4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G04530.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00328 | 15852 | 29072 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00423 | E1.10.3.3 | EC:1.10.3.3 | Ascorbate and aldarate metabolism | map00053 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000328s00018320.1 | PF00394.17 | Cu-oxidase | 74 | 221 | 9.00E-41 |
| Glyur000328s00018320.1 | PF07731.9 | Cu-oxidase_2 | 326 | 441 | 1.30E-35 |
| Glyur000328s00018320.1 | PF07732.10 | Cu-oxidase_3 | 454 | 564 | 2.30E-29 |
| Glyur000328s00018320.1 | PF00394.17 | Cu-oxidase | 577 | 740 | 9.90E-49 |
| Glyur000328s00018320.1 | PF07731.9 | Cu-oxidase_2 | 846 | 966 | 6.50E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.616 |
| SRR1783600 | control | 0.533 |
| SRR1783602 | moderate drought stress | 1.892 |
| SRR1811619 | moderate drought stress | 1.981 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.657 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.705 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.252 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.235 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.201 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.025 |
| SRR2967015 | Control (Tissue:root) | 0.149 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.166 |
| SRR9715740 | Leave | 0.517 |
| SRR9715741 | Leave | 0.698 |
| SRR9715739 | Root | 0.378 |
| SRR9715742 | Root | 0.648 |
| SRR9715743 | Root | 0.436 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 17.152 |
| SRR8400027 | Control-Root | 0.407 |