Gene detail information of Glyur000328s00018335.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G21170.1 | 1.00E-85 | 5'-AMP-activated protein kinase beta-2 subunit protein |
| NR | XP_004491195.1 | 1.60E-145 | PREDICTED: SNF1-related protein kinase regulatory subunit beta-1-like [Cicer arietinum] |
| Swissprot | tr|Q84VQ1|KINB1_ARATH | 8.00E-105 | SNF1-related protein kinase regulatory subunit beta-1 |
| trEMBL | tr|Q4VYF4|Q4VYF4_PEA | 3.00E-145 | SNF1-related protein kinase regulatory beta subunit 1 {ECO:0000313|EMBL:CAI96820.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00328 | 112626 | 117669 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM48 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000328s00018335.1 | PF04739.10 | AMPKBI | 289 | 365 | 3.70E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 54.573 |
| SRR1783600 | control | 54.248 |
| SRR1783602 | moderate drought stress | 84.871 |
| SRR1811619 | moderate drought stress | 83.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 37.057 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 36.664 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 39.640 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 37.692 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 40.170 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 40.370 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.819 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.265 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 37.228 |
| SRR2868004 | Drought Stress(Tissue:root) | 65.956 |
| SRR2967015 | Control (Tissue:root) | 92.467 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 15.830 |
| SRR9715740 | Leave | 17.900 |
| SRR9715741 | Leave | 28.031 |
| SRR9715739 | Root | 46.863 |
| SRR9715742 | Root | 35.225 |
| SRR9715743 | Root | 32.489 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 61.975 |
| SRR8749028 | MeJA induced 9h | 47.470 |
| SRR8749029 | MeJA induced 9h | 72.338 |
| SRR8749030 | Uninduced | 57.602 |
| SRR8749031 | Uninduced | 129.304 |
| SRR8749032 | Uninduced | 147.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 31.469 |
| SRR8400027 | Control-Root | 31.031 |