Gene detail information of Glyur000328s00018337.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G26970.12.00E-86Polynucleotidyl transferase, ribonuclease H-like superfamily protein
NRXP_004491197.11.20E-149PREDICTED: oligoribonuclease-like [Cicer arietinum]
COGYP_003269562.14.00E-60exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365]
Swissprottr|Q9ZVE0|ORN_ARATH4.00E-108Oligoribonuclease
trEMBLtr|I1M796|I1M796_SOYBN1.00E-147Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G04450.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00328123648130997+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13288orn, REX2, REXO2 EC:3.1.-.- Ribosome biogenesis in eukaryotes map03008


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0004527  exonuclease activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000328s00018337.1PF00929.19RNase_T662311.50E-28


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.406
SRR1783600control5.234
SRR1783602moderate drought stress5.829
SRR1811619moderate drought stress5.940

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.780
DRR006520Root Summer glycyrrhizin high producing strain14.220
DRR006521Root Winter glycyrrhizin high producing strain11.662
DRR006522Root Winter glycyrrhizin high producing strain11.069
DRR006523Root Summer glycyrrhizin low producing strain13.089
DRR006524Root Summer glycyrrhizin low producing strain13.308
DRR006525Leaf Summer glycyrrhizin high producing strain11.267
DRR006526Leaf Summer glycyrrhizin high producing strain10.615

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.546
SRR2868004Drought Stress(Tissue:root)18.844
SRR2967015Control (Tissue:root)17.195

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave18.838
SRR9715740Leave21.580
SRR9715741Leave20.603
SRR9715739Root3.549
SRR9715742Root7.473
SRR9715743Root6.890

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.345
SRR8749028MeJA induced 9h13.494
SRR8749029MeJA induced 9h14.560
SRR8749030Uninduced12.061
SRR8749031Uninduced9.628
SRR8749032Uninduced8.123

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.479
SRR8400027Control-Root19.757

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved