Gene detail information of Glyur000328s00018341.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G10270.1 | 0 | cyclin-dependent kinase C;1 |
| NR | XP_003519496.1 | 0 | PREDICTED: cyclin-dependent kinase C-2-like [Glycine max] |
| COG | YP_003110834.1 | 7.00E-21 | serine/threonine protein kinase [Catenulispora acidiphila DSM 44928] |
| Swissprot | tr|Q9LFT8|CDKC1_ARATH | 0 | Cyclin-dependent kinase C-1 |
| trEMBL | tr|I1JIS7|I1JIS7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G44400.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00328 | 158622 | 163190 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:4.5.2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000328s00018341.1 | PF00069.20 | Pkinase | 78 | 367 | 4.50E-73 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 54.247 |
| SRR1783600 | control | 54.403 |
| SRR1783602 | moderate drought stress | 58.420 |
| SRR1811619 | moderate drought stress | 58.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 75.675 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 74.896 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 89.286 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 86.906 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 67.782 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 67.498 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 65.506 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 65.099 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 70.845 |
| SRR2868004 | Drought Stress(Tissue:root) | 76.440 |
| SRR2967015 | Control (Tissue:root) | 76.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 47.991 |
| SRR9715740 | Leave | 59.108 |
| SRR9715741 | Leave | 52.902 |
| SRR9715739 | Root | 26.392 |
| SRR9715742 | Root | 45.244 |
| SRR9715743 | Root | 43.128 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 65.157 |
| SRR8749028 | MeJA induced 9h | 58.459 |
| SRR8749029 | MeJA induced 9h | 62.051 |
| SRR8749030 | Uninduced | 77.304 |
| SRR8749031 | Uninduced | 76.799 |
| SRR8749032 | Uninduced | 55.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 66.634 |
| SRR8400027 | Control-Root | 63.329 |