Gene detail information of Glyur000328s00018346.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G55020.1 | 1.00E-49 | myb domain protein 120 |
| NR | XP_003543825.2 | 3.56E-71 | PREDICTED: transcription factor GAMYB-like isoform X1 [Glycine max] |
| Swissprot | tr|Q0JIC2|GAM1_ORYSJ | 2.00E-53 | Transcription factor GAMYB |
| trEMBL | tr|K7LXA1|K7LXA1_SOYBN | 2.00E-71 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G04031.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00328 | 190727 | 192622 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000328s00018346.1 | PF00249.26 | Myb_DNA-binding | 14 | 61 | 2.80E-16 |
| Glyur000328s00018346.1 | PF00249.26 | Myb_DNA-binding | 67 | 110 | 4.10E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.028 |
| SRR1783600 | control | 0.007 |
| SRR1783602 | moderate drought stress | 0.079 |
| SRR1811619 | moderate drought stress | 0.060 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.133 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.055 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.218 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.122 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.473 |
| SRR2967015 | Control (Tissue:root) | 0.424 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.080 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.050 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.048 |
| SRR8400027 | Control-Root | 0.086 |