Gene detail

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Gene detail information of Glyur000329s00019821.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G28440.1	0	HAESA-like 1
NR	KEH39191.1	0	LRR receptor-like kinase family protein [Medicago truncatula]
COG	YP_004775215.1	6.00E-54	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9SGP2\|HSL1_ARATH	0	Receptor-like protein kinase HSL1 (Precursor)
trEMBL	tr\|A0A072VC59\|A0A072VC59_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:KEH39191.1}

Sequence

Transcript Sequence

>Glyur000329s00019821.1
CTGACTCAGCGAAACAGAGTAGTAGAAAACAGAGCAAGCATGGTTGAACAANTGTTCCTCTTTGTTCTGTTCCTCTCTGTTTCTTCTCCCACTCTTTCTCTCAACCAAGAGGGTCTCTTCCTCCTCGGCGCCAAGCTCCAGCTCTCCGACCCTTCCAATTCCCTCTCCGACTGGAACCGCCGCGATCCCACCCCTTGCAACTGGACCGGCGTCGCCTGTAACCCCCTCACCGGCGCCGTCACCTCCGTCAACCTCCCAAACTCCCAACTCTCCGGCCAATTCCCGTCCTCCCTCTGCCGCCTCCCCTCTCTCTCCTCCCTCTCTCTTCCCAACAATAACCTCAACTCCTCCCTCCCCTCCGCCGCCATCGCCGCCTGCACCTCCCTCCGCCACCTCAACCTCTCCCTCAACCTCCTCTCCGGCCCCATCCCCGATACCCTCTCCCACCTCCCCCTCCTTCAAAGCCTCGACCTCTCCCTCAACAACTTCTCCGGCCACATTCCGGCCACCTTCGGCAATTTCCGGCNACTCNAGTTTCTCTCCCTCGTCAGCAACCTCCTCAACGGAACATTACCTTCCTCCCTCGGCAACGTTTCCACCCTCAGGGAGCTTCACCTCGCATACAACACGTTCCTCGACACGGGTCCCATTCCCACATCGTTCGGCAACCTAACCAACCTCGAGGTTCTATGGCTGGCGGCGTGCAACCTCGTGGGCCCCATACCCCTTTCGCTTNGGAGCCTCGTTCGGCTTCGGAACCTCGACTTGTCGCAGAACATGCTCAACGGGACCATACCGGAAACCGTCGTGGCGGGTTTGACCAGCATTGTGCAAATCGAGCTATACCAGAACTCACTCTCCGGCGAGCTGCCACGTGTCGGTTTCGCCAACTTAACCCTGTTGGAACGATTTGATGCCTCGGATAACGAGTTGACCGGGACGATTCCCGACGAGTTGTGCGGGTTAAAGAAACTCGGGTCACTCAACTTGTACCTTAACCGTCTCGAGGGTTCTATTCCGGAGACCTTAGCTTTGTCTGAGAACTTGTACGAGCTCATGGTTTTCAACAACTCGCTCTCGGGGCGGTTGCCGAGTGCACTGGGAAGCAACTCGCCGCTGCAGATCCTCGACGTCTCGTTTAATCAATTTTCCGGCGAGATTCCGGCGAAACTTTGCCGCCGGGNAGGGTTGCAGGAGCTGCTGCTGCTTCATAATTCTTTTTCCGGGGAAATCCCCGAGAGCCTCGGGAACTGCTCGAGCCTAACGAGGGTTCGGCTTGGGAACAATAACCTCTCTGGTGTTGTGCCTTATGGTCTATGGGGTCTGCCCCACGTGTATCTAATGGAGCTCGTTGAGAACTCTCTTTCTGGGCCAATCTCAAATGCGATTTCGGGGGCGAATAATCTCTCAATTTTGTTACTTTCCGGGAACAAGCTTTCTGGGTCGATTCCTGAGGCAATTGGGTCGTTGCATAACCTTGGGGAGTTTGTTGCTAGCCACAATAGTCTTACTGGTGCGATTCCCAATAGTATGGTGAAGCTGAGCCAGTTGGGTAGGCTTGTTCTCAGTGACAATCAACTCTCTGGAGAGATTCCTTTAGGTGTTGGTGAGTGNAAGAAGCTCAATGAGCTTGATTTGGCAAATAATAGGCTTGGTGGCAGTATTCCAAGTGAATTGGGAACCTTGCCTGGGCTTAATTTTCTTGATCTTTCTGGAAATTGCTTCTCTGGTGAAATCCCAATGGAGCTGCAGAATTTGAAGCTTGATTTTCTGAATCTGTCAAACAACCAGCTTTCTGGGAAAATCCCTCCTCTTTATGCTAATNGGAATTACAGGGAGAGTTTTCTAGGAAACACTGGCCTCTGTGGTGGTGATCTCTCNGGGGTATGTCCAAGTACCTATGGTGAGAGTAAGAACAAGAAGTACATGTGGGTTTTCAGGTTCATGTTTTCACTTGCTGTGGTTGTGTTAATCGTTGGGGTGGCCTGGTTTTACTTCAAGTTCCGGAATTTCAACAAGATGAAAAAGGGGTTTCTCATGTCAAAGTGGAGGTCGTTCCATAAACTAGGCTTCAGTGAGTTTGAGATTGTTAAATTGATGAGCGAAGATAACGTGATAGGGAGTGGATCTTCTGGGAAGGTCTACAAAGTGGTGCTGAGTAATGGTGAGGCAGTGGCAGTGAAGAAATTGTGGGGAGCAAGATCAACTAAGGTGGAAAATGGAGATGTTGATGATGCTGAAAAGGATATGTTTGAAGCTGAAGTTGAGACACTTGGGAAGATTCGGCACAAGAATATTGTGAGGCTATGGTGCTGCTGCAACAGTGGGGATAGCAAGCTGCTAGTTTATGAGTACATGCCAAATGGGAGCCTGGCTGATTTGTTGAACAGCAGCAAGAAAAACTTGTTGGATTGGCCAACTAGATATAAAATTGCAATTGATGCTGCTGAGGGGCTTTCTTACTTGCACCACGATTGTGTCCCTCCTATTGTTCATAGGGATGTGAAATCTAGCAATATCTTGCTAGATGGAGAATTTGGAGCAAAAGTTGCTGATTTTGGAGTTGCCAAAATTGTTGGGGGAGTCAACCAAGGAGCAGAATCCATGTCTGTGATTGCCGGATCTTATGGTTACATTGCACCAGAAGATCTGGTAAAATGGGTTTCTTCCACATTGGATGAGGAAGGACAGGATCAAGTGATTGATCCCACTCTTGATCCAAGATACAGGGAAGAAATCAGCAAGGTACTCAGCGTGGGGCTTCTTTGCACCAGCTCTCTTCCTATAACACGCCCTTCAATGCGCAGAGTGGTGAAAATGCTGCAGGAAGTAACTGCTGTTCCCAAATCCAGAAGCGGAAAACTCTCCCCTTACTATCAAGAAGAGGCCTCTGATAATGATCATCACTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00329	36535	39926	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000329s00019821.1	PF08263.7	LRRNT_2	34	74	6.90E-10
Glyur000329s00019821.1	PF00560.28	LRR_1	153	173	0.49
Glyur000329s00019821.1	PF13855.1	LRR_8	200	261	5.10E-07
Glyur000329s00019821.1	PF00560.28	LRR_1	468	490	1.1
Glyur000329s00019821.1	PF00560.28	LRR_1	540	561	0.35
Glyur000329s00019821.1	PF00560.28	LRR_1	565	586	0.22
Glyur000329s00019821.1	PF00560.28	LRR_1	587	604	0.38
Glyur000329s00019821.1	PF00069.20	Pkinase	703	885	1.60E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.846
SRR1783600	control	10.807
SRR1783602	moderate drought stress	17.010
SRR1811619	moderate drought stress	17.281

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.693
DRR006520	Root Summer glycyrrhizin high producing strain	4.420
DRR006521	Root Winter glycyrrhizin high producing strain	1.763
DRR006522	Root Winter glycyrrhizin high producing strain	1.687
DRR006523	Root Summer glycyrrhizin low producing strain	6.528
DRR006524	Root Summer glycyrrhizin low producing strain	6.317
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.344
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.262

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	10.662
SRR2868004	Drought Stress(Tissue:root)	9.190
SRR2967015	Control (Tissue:root)	11.754

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	3.068
SRR9715740	Leave	3.683
SRR9715741	Leave	3.520
SRR9715739	Root	14.380
SRR9715742	Root	21.057
SRR9715743	Root	19.179

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.838
SRR8749028	MeJA induced 9h	2.796
SRR8749029	MeJA induced 9h	0.758
SRR8749030	Uninduced	3.737
SRR8749031	Uninduced	0.910
SRR8749032	Uninduced	1.735

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	16.464
SRR8400027	Control-Root	14.914