Gene detail

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Gene detail information of Glyur000329s00019824.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G03840.2	8.00E-99	C2H2 and C2HC zinc fingers superfamily protein
NR	XP_003541898.2	0	PREDICTED: zinc finger protein MAGPIE-like [Glycine max]
Swissprot	tr\|Q9ZWA6\|IDD3_ARATH	7.00E-123	Zinc finger protein MAGPIE {ECO:0000303\|PubMed:17785527}
trEMBL	tr\|I1M3P4\|I1M3P4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G36960.1}

Sequence

Transcript Sequence

>Glyur000329s00019824.1
ATGCTAGAAAAGATGGACGACAGAGAACTTTCAAATGGTTTCCTTCATCAAAACCCAACAAACACATCTAATAATCCTGAAGCTGAAGTCGTAGCCTTATCACCAAAGACACTGATGGCAACCAACAGATTCGTGTGTGAGATATGTCTGAAGGGTTTCCAGAGGGACCAAAACCTTCAACTCCATCGACGTGGGCACAACCTTCCTTGGAAGCTAAAGCAGAGGACAAGCAAGGAAGTGAGGAAGCGAGTGTATGTGTGTCCGGAGAAGACATGTGTCCACAACCACCCTTCAAGGGCTCTGGGAGACTTAACTGGGATAAAGAAGCACTTCTGCAGGAAGCACGGGGAGAAGAAGTGGAAGTGTGACAAGTGCTCAAAGCGTTATGCTGTTCAATCGGATTGGAAAGCACACTCCAAGACTTGTGGCACCAGAGAATACAAATGTGACTGTGGCACTATCTTTTCACGGAGGGATAGCTTCGTCACTCACAGGGCCTTCTGCGATGCCTTAGCAGAAGAAACAGCTAGAGTAAACTCAGCAACAACAAACATAAACAACCCAATATTTGGAGGCAACCTCGGTTACAGTAGTGGCATGNAAACTTCCTTTGGACCAAACATGGGAACCCATTTTTCTTCACTTTTCAAGCCAATTTCATGCACAGAGGAAACAAGTAACCAAACATCAAGAGGTCTATCCCTTTGGAATATGACTCAAGCATCTCAGCAGGCTCATGAGACAATGTCAAATAATAGCAATTTGCATGAGATTCAAGGAGCAGTATACTCAAACCCACCACCCTCTAATAATTATCAGCTAAATTGGGTGTTTGGAAGTCATCAAGAGCTAACTAGCACTGCTTCACTTCCACTAGTCAATGATAGTATTGTTAAGGATATTACTAATACAAACCAACTCATCAGCGTTCCTTCCTTGTATAGCTCCCAACATCATCAAACAACAACAACCTCAGCAAACATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTCAAATTGGGACAACTTCAACCGACCCATCATTCCTTGGGAGCTTAGGTTTGAGATGCAGCAACAGTAGTCCAAGGCAAGATGGGAACAAATTTTGTGGGGTGGTGTACGGTTCAGGTTCAGTACTCACAAATCATCATGGGAGCGAGCAAGCAGAGAACAACTTATACTCAGGTGATTTGTCACAAATGCACCCCACAAAACGACGCCACGTGCTGAGTGAAGAGAGTGCATGGGGACAAACTAGGGATTTTCTTGGTGTTGGAGGTGCTAACCATTTGCCACCCTTCATCAATCAACGGCTGGATTTAATTTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00329	54395	57121	-

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000329s00019824.1	PF00096.21	zf-C2H2	44	66	0.026

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.100
SRR1783600	control	0.074
SRR1783602	moderate drought stress	0.988
SRR1811619	moderate drought stress	0.937

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.470
DRR006520	Root Summer glycyrrhizin high producing strain	2.428
DRR006521	Root Winter glycyrrhizin high producing strain	0.083
DRR006522	Root Winter glycyrrhizin high producing strain	0.082
DRR006523	Root Summer glycyrrhizin low producing strain	1.875
DRR006524	Root Summer glycyrrhizin low producing strain	1.631
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.279
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.399

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	15.334
SRR2868004	Drought Stress(Tissue:root)	10.604
SRR2967015	Control (Tissue:root)	14.643

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.791
SRR9715740	Leave	1.634
SRR9715741	Leave	1.646
SRR9715739	Root	0.224
SRR9715742	Root	1.366
SRR9715743	Root	0.852

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.046
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.001

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.111
SRR8400027	Control-Root	1.575