Gene detail information of Glyur000329s00019832.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G06290.11.00E-166acyl-CoA oxidase 3
NRKHN07770.10Acyl-coenzyme A oxidase 3, peroxisomal [Glycine soja]
COGYP_003571780.12.00E-74acyl-CoA oxidase [Salinibacter ruber M8]
Swissprottr|P0CZ23|ACOX3_ARATH0Acyl-coenzyme A oxidase 3, peroxisomal (Precursor)
trEMBLtr|I1KEV4|I1KEV4_SOYBN0Acyl-coenzyme A oxidase {ECO:0000256|PIRNR:PIRNR000168}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003298155487162-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00232E1.3.3.6, ACOX1, ACOX3 EC:1.3.3.6 Fatty acid metabolism map01212
Fatty acid degradationmap00071
alpha-Linolenic acid metabolismmap00592
Biosynthesis of unsaturated fatty acidsmap01040
cAMP signaling pathwaymap04024
Peroxisomemap04146
PPAR signaling pathwaymap03320


Gene Ontology

biological_process

GO:0006635  fatty acid beta-oxidation

GO:0008152  metabolic process

GO:0055114  oxidation-reduction process


cellular_component

GO:0005777  peroxisome


molecular_function

GO:0003995  acyl-CoA dehydrogenase activity

GO:0003997  acyl-CoA oxidase activity

GO:0016627  oxidoreductase activity, acting on the CH-CH group of donors

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000329s00019832.1PF01756.14ACOX3034323.80E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.171
SRR1783600control0.168
SRR1783602moderate drought stress0.168
SRR1811619moderate drought stress0.143

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.080
DRR006520Root Summer glycyrrhizin high producing strain0.000
DRR006521Root Winter glycyrrhizin high producing strain0.152
DRR006522Root Winter glycyrrhizin high producing strain0.161
DRR006523Root Summer glycyrrhizin low producing strain0.082
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain2.492
DRR006526Leaf Summer glycyrrhizin high producing strain2.214

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.590
SRR2868004Drought Stress(Tissue:root)1.402
SRR2967015Control (Tissue:root)1.010

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.746
SRR9715740Leave1.437
SRR9715741Leave1.335
SRR9715739Root0.000
SRR9715742Root0.099
SRR9715743Root0.090

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.027
SRR8749028MeJA induced 9h0.504
SRR8749029MeJA induced 9h0.082
SRR8749030Uninduced0.441
SRR8749031Uninduced0.286
SRR8749032Uninduced0.100

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.283
SRR8400027Control-Root0.445

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved