Gene detail information of Glyur000329s00019841.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42350.1 | 9.00E-21 | RING/U-box superfamily protein |
| NR | XP_004487181.1 | 3.45E-89 | PREDICTED: E3 ubiquitin-protein ligase ATL41-like [Cicer arietinum] |
| Swissprot | tr|Q9SLC3|ATL41_ARATH | 2.00E-56 | E3 ubiquitin-protein ligase ATL41 |
| trEMBL | tr|G7ZVJ1|G7ZVJ1_MEDTR | 8.00E-87 | Uncharacterized protein {ECO:0000313|EMBL:AFK49251.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00329 | 117360 | 118127 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000329s00019841.1 | PF13639.1 | zf-RING_2 | 122 | 166 | 7.00E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.910 |
| SRR1783600 | control | 21.190 |
| SRR1783602 | moderate drought stress | 17.048 |
| SRR1811619 | moderate drought stress | 17.971 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.057 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.503 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.911 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.329 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.453 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.571 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 25.966 |
| SRR2868004 | Drought Stress(Tissue:root) | 41.141 |
| SRR2967015 | Control (Tissue:root) | 44.272 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 11.129 |
| SRR9715740 | Leave | 9.124 |
| SRR9715741 | Leave | 20.789 |
| SRR9715739 | Root | 11.566 |
| SRR9715742 | Root | 10.007 |
| SRR9715743 | Root | 9.561 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 45.086 |
| SRR8749028 | MeJA induced 9h | 36.344 |
| SRR8749029 | MeJA induced 9h | 27.232 |
| SRR8749030 | Uninduced | 80.774 |
| SRR8749031 | Uninduced | 38.458 |
| SRR8749032 | Uninduced | 28.721 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 17.918 |
| SRR8400027 | Control-Root | 15.832 |