Gene detail information of Glyur000329s00019843.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G15030.3 | 6.00E-57 | TCP family transcription factor 4 |
| NR | XP_003543311.1 | 0 | PREDICTED: transcription factor TCP4-like isoform X1 [Glycine max] |
| Swissprot | tr|Q8LPR5|TCP4_ARATH | 5.00E-74 | Transcription factor TCP4 |
| trEMBL | tr|K7M2K4|K7M2K4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G36840.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00329 | 128018 | 130033 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TCP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000329s00019843.1 | PF03634.8 | TCP | 103 | 232 | 4.60E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.545 |
| SRR1783600 | control | 3.388 |
| SRR1783602 | moderate drought stress | 3.325 |
| SRR1811619 | moderate drought stress | 3.188 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.493 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.562 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.529 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.317 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 95.501 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 95.280 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.148 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.873 |
| SRR2967015 | Control (Tissue:root) | 6.915 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 60.791 |
| SRR9715740 | Leave | 73.083 |
| SRR9715741 | Leave | 74.771 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 1.494 |
| SRR9715743 | Root | 1.041 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.186 |
| SRR8400027 | Control-Root | 2.886 |