Gene detail information of Glyur000330s00019514.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G40140.1 | 8.00E-77 | RING/U-box superfamily protein with ARM repeat domain |
| NR | KHN13278.1 | 0 | U-box domain-containing protein 40 [Glycine soja] |
| COG | YP_001957952.1 | 3.00E-06 | hypothetical protein Aasi_0852 [Candidatus Amoebophilus asiaticus 5a2] |
| Swissprot | tr|Q9FL17|PUB40_ARATH | 2.00E-150 | U-box domain-containing protein 40 |
| trEMBL | tr|K7LXC7|K7LXC7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G04610.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00330 | 49074 | 51202 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U_box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000330s00019514.1 | PF04564.10 | U-box | 60 | 129 | 4.50E-14 |
| Glyur000330s00019514.1 | PF00514.18 | Arm | 333 | 372 | 0.00032 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.848 |
| SRR1783600 | control | 21.079 |
| SRR1783602 | moderate drought stress | 18.657 |
| SRR1811619 | moderate drought stress | 18.565 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.899 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 24.310 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.131 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.159 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.648 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.274 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.146 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.922 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 13.157 |
| SRR2868004 | Drought Stress(Tissue:root) | 12.253 |
| SRR2967015 | Control (Tissue:root) | 11.348 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.199 |
| SRR9715740 | Leave | 3.800 |
| SRR9715741 | Leave | 3.633 |
| SRR9715739 | Root | 7.249 |
| SRR9715742 | Root | 7.574 |
| SRR9715743 | Root | 7.394 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.064 |
| SRR8749028 | MeJA induced 9h | 4.277 |
| SRR8749029 | MeJA induced 9h | 1.477 |
| SRR8749030 | Uninduced | 2.881 |
| SRR8749031 | Uninduced | 1.262 |
| SRR8749032 | Uninduced | 1.413 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.141 |
| SRR8400027 | Control-Root | 15.781 |