Gene detail information of Glyur000330s00019528.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G28180.1 | 0 | Cellulose-synthase-like C4 |
| NR | XP_007151122.1 | 0 | hypothetical protein PHAVU_004G019600g [Phaseolus vulgaris] |
| COG | YP_004343962.1 | 8.00E-56 | Glucomannan 4-beta-mannosyltransferase [Fluviicola taffensis DSM 16823] |
| Swissprot | tr|Q9LJP4|CSLC4_ARATH | 0 | Xyloglucan glycosyltransferase 4 |
| trEMBL | tr|V7C2J4|V7C2J4_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW23116.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00330 | 132189 | 135255 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000330s00019528.1 | PF13641.1 | Glyco_tranf_2_3 | 208 | 421 | 3.30E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.518 |
| SRR1783600 | control | 12.387 |
| SRR1783602 | moderate drought stress | 7.204 |
| SRR1811619 | moderate drought stress | 7.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.436 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.528 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.581 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.618 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.717 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.605 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.845 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.833 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 31.334 |
| SRR2868004 | Drought Stress(Tissue:root) | 14.753 |
| SRR2967015 | Control (Tissue:root) | 12.869 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.829 |
| SRR9715740 | Leave | 0.726 |
| SRR9715741 | Leave | 2.287 |
| SRR9715739 | Root | 6.805 |
| SRR9715742 | Root | 12.862 |
| SRR9715743 | Root | 10.689 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.500 |
| SRR8749028 | MeJA induced 9h | 29.049 |
| SRR8749029 | MeJA induced 9h | 35.626 |
| SRR8749030 | Uninduced | 44.542 |
| SRR8749031 | Uninduced | 9.566 |
| SRR8749032 | Uninduced | 12.554 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.473 |
| SRR8400027 | Control-Root | 16.419 |