Gene detail information of Glyur000331s00020720.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G77330.13.00E-1232-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NRNP_001266092.101-aminocyclopropane-1-carboxylate oxidase 5-like [Cicer arietinum]
COGYP_007565700.12.00E-32putative oxidoreductase [Ilumatobacter coccineus YM16-304]
Swissprottr|Q0WPW4|ACCO5_ARATH4.00E-1541-aminocyclopropane-1-carboxylate oxidase 5
trEMBLtr|Q84L58|Q84L58_CICAR01-aminocyclopropane-1-carboxylic acid oxidase {ECO:0000313|EMBL:CAD70622.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00331116070118022-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05933E1.14.17.4 EC:1.14.17.4 Cysteine and methionine metabolism map00270


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016491  oxidoreductase activity

GO:0016706  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000331s00020720.1PF14226.1DIOX_N3968.60E-13
Glyur000331s00020720.1PF03171.152OG-FeII_Oxy1502472.10E-24


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.589
SRR1783600control0.621
SRR1783602moderate drought stress0.000
SRR1811619moderate drought stress0.000

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.117
DRR006520Root Summer glycyrrhizin high producing strain0.103
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.118
DRR006523Root Summer glycyrrhizin low producing strain0.687
DRR006524Root Summer glycyrrhizin low producing strain0.708
DRR006525Leaf Summer glycyrrhizin high producing strain0.169
DRR006526Leaf Summer glycyrrhizin high producing strain0.151

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)60.346
SRR2868004Drought Stress(Tissue:root)36.902
SRR2967015Control (Tissue:root)33.264

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.586
SRR9715740Leave0.064
SRR9715741Leave0.000
SRR9715739Root0.549
SRR9715742Root0.520
SRR9715743Root0.640

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.532
SRR8749028MeJA induced 9h0.298
SRR8749029MeJA induced 9h0.078
SRR8749030Uninduced0.708
SRR8749031Uninduced1.526
SRR8749032Uninduced1.610

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.813
SRR8400027Control-Root18.359

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved