Gene detail information of Glyur000331s00020726.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G21650.33.00E-179Preprotein translocase SecA family protein
NRXP_004502528.10PREDICTED: uncharacterized protein LOC101500010 isoform X1 [Cicer arietinum]
COGYP_007113657.13.00E-21(Myosin heavy-chain) kinase [Oscillatoria nigro-viridis PCC 7112]
Swissprottr|Q9FE91|C3H62_ARATH3.00E-13Zinc finger CCCH domain-containing protein 62
trEMBLtr|I1KAE0|I1KAE0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G12310.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00331172420177678-


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:2.2.2
Ubiquitin FamilyRING
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005515  protein binding

GO:0005524  ATP binding

GO:0008270  zinc ion binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000331s00020726.1PF13639.1zf-RING_26511.90E-07
Glyur000331s00020726.1PF00069.20Pkinase3474630.00014
Glyur000331s00020726.1PF00400.27WD405515836.80E-05
Glyur000331s00020726.1PF00400.27WD405896250.022
Glyur000331s00020726.1PF00400.27WD406496740.064
Glyur000331s00020726.1PF00400.27WD406807143.60E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.206
SRR1783600control18.231
SRR1783602moderate drought stress23.720
SRR1811619moderate drought stress23.997

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain31.968
DRR006520Root Summer glycyrrhizin high producing strain31.623
DRR006521Root Winter glycyrrhizin high producing strain44.155
DRR006522Root Winter glycyrrhizin high producing strain42.853
DRR006523Root Summer glycyrrhizin low producing strain27.338
DRR006524Root Summer glycyrrhizin low producing strain27.111
DRR006525Leaf Summer glycyrrhizin high producing strain13.460
DRR006526Leaf Summer glycyrrhizin high producing strain13.427

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)29.338
SRR2868004Drought Stress(Tissue:root)42.246
SRR2967015Control (Tissue:root)41.475

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.867
SRR9715740Leave15.270
SRR9715741Leave18.751
SRR9715739Root13.147
SRR9715742Root24.497
SRR9715743Root22.883

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.730
SRR8749028MeJA induced 9h31.077
SRR8749029MeJA induced 9h23.137
SRR8749030Uninduced24.522
SRR8749031Uninduced25.291
SRR8749032Uninduced21.336

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.076
SRR8400027Control-Root30.279

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved