Gene detail information of Glyur000332s00014977.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G36160.20acetyl-CoA carboxylase 1
NRXP_003522811.10PREDICTED: acetyl-CoA carboxylase 1-like [Glycine max]
COGYP_001016340.15.00E-74acetyl-CoA carboxylase biotin carboxylase subunit [Prochlorococcus marinus str. MIT 9303]
Swissprottr|Q38970|ACC1_ARATH0Biotin carboxylase
trEMBLtr|I1JVH6|I1JVH6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G11550.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003324540283265-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11262ACACA EC:6.4.1.2 6.3.4.14 Fatty acid metabolism map01212
Pyruvate metabolismmap00620
Propanoate metabolismmap00640
Fatty acid biosynthesismap00061
Aflatoxin biosynthesismap00254
AMPK signaling pathwaymap04152
Insulin signaling pathwaymap04910
Glucagon signaling pathwaymap04922


Gene Ontology

biological_process

GO:0006633  fatty acid biosynthetic process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0003989  acetyl-CoA carboxylase activity

GO:0004075  biotin carboxylase activity

GO:0005524  ATP binding

GO:0016874  ligase activity

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000332s00014977.2PF00289.17CPSase_L_chain581772.20E-26
Glyur000332s00014977.2PF02786.12CPSase_L_D22254073.60E-46
Glyur000332s00014977.2PF02785.14Biotin_carb_C4545603.90E-21
Glyur000332s00014977.2PF00364.17Biotin_lipoyl7087671.10E-07
Glyur000332s00014977.2PF08326.7ACC_central76815114.20E-224
Glyur000332s00014977.2PF01039.17Carboxyl_trans161321653.30E-166
Glyur000332s00014977.2PF08326.7ACC_central240430365.90E-162
Glyur000332s00014977.2PF01039.17Carboxyl_trans313836901.70E-158


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control67.593
SRR1783600control65.186
SRR1783602moderate drought stress73.181
SRR1811619moderate drought stress71.337

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain39.781
DRR006520Root Summer glycyrrhizin high producing strain39.070
DRR006521Root Winter glycyrrhizin high producing strain29.273
DRR006522Root Winter glycyrrhizin high producing strain28.848
DRR006523Root Summer glycyrrhizin low producing strain27.924
DRR006524Root Summer glycyrrhizin low producing strain28.057
DRR006525Leaf Summer glycyrrhizin high producing strain22.547
DRR006526Leaf Summer glycyrrhizin high producing strain22.521

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)238.571
SRR2868004Drought Stress(Tissue:root)243.172
SRR2967015Control (Tissue:root)231.011

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave55.454
SRR9715740Leave36.242
SRR9715741Leave52.350
SRR9715739Root19.511
SRR9715742Root123.684
SRR9715743Root100.860

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.572
SRR8749028MeJA induced 9h29.293
SRR8749029MeJA induced 9h5.710
SRR8749030Uninduced106.744
SRR8749031Uninduced96.458
SRR8749032Uninduced49.242

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root131.663
SRR8400027Control-Root130.827

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved