Gene detail information of Glyur000332s00014991.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G78070.10Transducin/WD40 repeat-like superfamily protein
NRXP_004500612.10PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like isoform X2 [Cicer arietinum]
COGYP_004907948.15.00E-19hypothetical protein KSE_62270 [Kitasatospora setae KM-6054]
Swissprottr|Q6S7B0|TAF5_ARATH2.00E-10Transcription initiation factor TFIID subunit 5
trEMBLtr|I1JVG7|I1JVG7_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G11330.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00332157955163195+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000332s00014991.1PF00400.27WD403133517.50E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.148
SRR1783600control9.011
SRR1783602moderate drought stress20.223
SRR1811619moderate drought stress19.493

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain34.741
DRR006520Root Summer glycyrrhizin high producing strain34.629
DRR006521Root Winter glycyrrhizin high producing strain551.803
DRR006522Root Winter glycyrrhizin high producing strain534.831
DRR006523Root Summer glycyrrhizin low producing strain74.236
DRR006524Root Summer glycyrrhizin low producing strain74.506
DRR006525Leaf Summer glycyrrhizin high producing strain8.696
DRR006526Leaf Summer glycyrrhizin high producing strain8.225

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)26.373
SRR2868004Drought Stress(Tissue:root)39.489
SRR2967015Control (Tissue:root)35.329

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.607
SRR9715740Leave20.387
SRR9715741Leave28.553
SRR9715739Root11.295
SRR9715742Root24.786
SRR9715743Root23.377

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.939
SRR8749028MeJA induced 9h17.636
SRR8749029MeJA induced 9h7.707
SRR8749030Uninduced25.854
SRR8749031Uninduced13.456
SRR8749032Uninduced12.008

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root25.257
SRR8400027Control-Root26.819

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved