Gene detail information of Glyur000334s00019183.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G75400.1 | 1.00E-93 | RING/U-box superfamily protein |
| NR | XP_007160723.1 | 0 | hypothetical protein PHAVU_001G011700g [Phaseolus vulgaris] |
| trEMBL | tr|V7CRA4|V7CRA4_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW32717.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00334 | 14058 | 17346 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.088 |
| SRR1783600 | control | 13.325 |
| SRR1783602 | moderate drought stress | 13.682 |
| SRR1811619 | moderate drought stress | 13.688 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 33.014 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 32.501 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 26.320 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.616 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.243 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.818 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.193 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.228 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 27.438 |
| SRR2868004 | Drought Stress(Tissue:root) | 37.808 |
| SRR2967015 | Control (Tissue:root) | 35.471 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 27.839 |
| SRR9715740 | Leave | 29.714 |
| SRR9715741 | Leave | 39.615 |
| SRR9715739 | Root | 9.272 |
| SRR9715742 | Root | 27.049 |
| SRR9715743 | Root | 22.413 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 37.262 |
| SRR8749028 | MeJA induced 9h | 44.106 |
| SRR8749029 | MeJA induced 9h | 39.927 |
| SRR8749030 | Uninduced | 46.166 |
| SRR8749031 | Uninduced | 70.155 |
| SRR8749032 | Uninduced | 65.942 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 33.142 |
| SRR8400027 | Control-Root | 31.122 |