Gene detail information of Glyur000334s00019195.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G39210.1 | 8.00E-105 | Glucose-1-phosphate adenylyltransferase family protein |
| NR | XP_007136623.1 | 4.70E-164 | hypothetical protein PHAVU_009G059800g [Phaseolus vulgaris] |
| COG | NP_682077.1 | 5.00E-104 | glucose-1-phosphate adenylyltransferase [Thermosynechococcus elongatus BP-1] |
| Swissprot | tr|P55231|GLGL3_ARATH | 5.00E-125 | Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic (Precursor) |
| trEMBL | tr|V7ASH8|V7ASH8_PHAVU | 2.00E-164 | Glucose-1-phosphate adenylyltransferase {ECO:0000256|RuleBase:RU003565} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00334 | 93948 | 98285 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00975 | glgC | EC:2.7.7.27 | Starch and sucrose metabolism | map00500 |
| Amino sugar and nucleotide sugar metabolism | map00520 | |||
| Biofilm formation - Escherichia coli | map02026 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000334s00019195.1 | PF00483.18 | NTP_transferase | 94 | 205 | 1.90E-29 |
| Glyur000334s00019195.1 | PF00483.18 | NTP_transferase | 218 | 290 | 2.80E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.038 |
| SRR1783600 | control | 0.028 |
| SRR1783602 | moderate drought stress | 0.011 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.038 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.089 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.064 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.003 |
| SRR2967015 | Control (Tissue:root) | 0.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.022 |
| SRR9715739 | Root | 0.001 |
| SRR9715742 | Root | 0.025 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.050 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.004 |
| SRR8400027 | Control-Root | 0.019 |