Gene detail information of Glyur000334s00019199.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G75330.12.00E-130ornithine carbamoyltransferase
NRKEH40171.10ornithine carbamoyltransferase [Medicago truncatula]
COGYP_001997178.15.00E-101ornithine carbamoyltransferase [Chloroherpeton thalassium ATCC 35110]
Swissprottr|Q43814|OTC_PEA2.00E-177Ornithine carbamoyltransferase, chloroplastic (Precursor)
trEMBLtr|A0A072VEY9|A0A072VEY9_MEDTR0Ornithine carbamoyltransferase {ECO:0000313|EMBL:KEH40171.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00334142296149720+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00611OTC, argF, argI EC:2.1.3.3 Biosynthesis of amino acids map01230
Arginine biosynthesismap00220


Gene Ontology

biological_process

GO:0006520  cellular amino acid metabolic process

GO:0006591  ornithine metabolic process


molecular_function

GO:0004585  ornithine carbamoyltransferase activity

GO:0016597  amino acid binding

GO:0016743  carboxyl- or carbamoyltransferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000334s00019199.1PF02729.16OTCace_N602021.30E-42
Glyur000334s00019199.1PF00185.19OTCace2133612.00E-51


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control539.362
SRR1783600control539.440
SRR1783602moderate drought stress420.907
SRR1811619moderate drought stress421.610

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain215.888
DRR006520Root Summer glycyrrhizin high producing strain213.568
DRR006521Root Winter glycyrrhizin high producing strain0.856
DRR006522Root Winter glycyrrhizin high producing strain0.937
DRR006523Root Summer glycyrrhizin low producing strain10.507
DRR006524Root Summer glycyrrhizin low producing strain10.355
DRR006525Leaf Summer glycyrrhizin high producing strain1.213
DRR006526Leaf Summer glycyrrhizin high producing strain1.303

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)178.834
SRR2868004Drought Stress(Tissue:root)251.434
SRR2967015Control (Tissue:root)173.746

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.673
SRR9715740Leave0.664
SRR9715741Leave0.479
SRR9715739Root304.924
SRR9715742Root368.520
SRR9715743Root355.069

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.108
SRR8749028MeJA induced 9h0.070
SRR8749029MeJA induced 9h0.252
SRR8749030Uninduced0.119
SRR8749031Uninduced0.480
SRR8749032Uninduced0.861

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root733.400
SRR8400027Control-Root943.046

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved