Gene detail information of Glyur000335s00017450.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G25560.23.00E-46CHY-type/CTCHY-type/RING-type Zinc finger protein
NRXP_006601111.11.59E-96PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like isoform X1 [Glycine max]
trEMBLtr|I1MWK2|I1MWK2_SOYBN6.00E-97Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G29800.5}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003355177357888+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10144RCHY1, PIRH2 EC:2.3.2.27 Ubiquitin mediated proteolysis map04120
p53 signaling pathwaymap04115
Measlesmap05162


Gene Ontology

molecular_function

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000335s00017450.1PF05495.7zf-CHY581418.50E-16
Glyur000335s00017450.1PF14599.1zinc_ribbon_61681962.70E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control34.813
SRR1783600control35.662
SRR1783602moderate drought stress100.311
SRR1811619moderate drought stress99.515

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain78.412
DRR006520Root Summer glycyrrhizin high producing strain79.933
DRR006521Root Winter glycyrrhizin high producing strain200.791
DRR006522Root Winter glycyrrhizin high producing strain196.418
DRR006523Root Summer glycyrrhizin low producing strain80.418
DRR006524Root Summer glycyrrhizin low producing strain78.934
DRR006525Leaf Summer glycyrrhizin high producing strain51.018
DRR006526Leaf Summer glycyrrhizin high producing strain50.188

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)88.697
SRR2868004Drought Stress(Tissue:root)90.273
SRR2967015Control (Tissue:root)158.354

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave33.980
SRR9715740Leave55.058
SRR9715741Leave70.201
SRR9715739Root5.404
SRR9715742Root34.968
SRR9715743Root31.486

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h179.265
SRR8749028MeJA induced 9h521.998
SRR8749029MeJA induced 9h238.514
SRR8749030Uninduced308.656
SRR8749031Uninduced529.784
SRR8749032Uninduced375.242

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root79.938
SRR8400027Control-Root75.537

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved