Gene detail information of Glyur000335s00017450.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT5G25560.2 | 3.00E-46 | CHY-type/CTCHY-type/RING-type Zinc finger protein |
NR | XP_006601111.1 | 1.59E-96 | PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like isoform X1 [Glycine max] |
trEMBL | tr|I1MWK2|I1MWK2_SOYBN | 6.00E-97 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G29800.5} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00335 | 51773 | 57888 | + |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K10144 | RCHY1, PIRH2 | EC:2.3.2.27 | Ubiquitin mediated proteolysis | map04120 |
p53 signaling pathway | map04115 | |||
Measles | map05162 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000335s00017450.1 | PF05495.7 | zf-CHY | 58 | 141 | 8.50E-16 |
Glyur000335s00017450.1 | PF14599.1 | zinc_ribbon_6 | 168 | 196 | 2.70E-08 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 34.813 |
SRR1783600 | control | 35.662 |
SRR1783602 | moderate drought stress | 100.311 |
SRR1811619 | moderate drought stress | 99.515 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 78.412 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 79.933 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 200.791 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 196.418 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 80.418 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 78.934 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 51.018 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 50.188 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 88.697 |
SRR2868004 | Drought Stress(Tissue:root) | 90.273 |
SRR2967015 | Control (Tissue:root) | 158.354 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 33.980 |
SRR9715740 | Leave | 55.058 |
SRR9715741 | Leave | 70.201 |
SRR9715739 | Root | 5.404 |
SRR9715742 | Root | 34.968 |
SRR9715743 | Root | 31.486 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 179.265 |
SRR8749028 | MeJA induced 9h | 521.998 |
SRR8749029 | MeJA induced 9h | 238.514 |
SRR8749030 | Uninduced | 308.656 |
SRR8749031 | Uninduced | 529.784 |
SRR8749032 | Uninduced | 375.242 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 79.938 |
SRR8400027 | Control-Root | 75.537 |