Gene detail information of Glyur000335s00017455.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G31140.10O-Glycosyl hydrolases family 17 protein
NRXP_006596135.10PREDICTED: glucan endo-1,3-beta-glucosidase 5-like [Glycine max]
Swissprottr|Q9M088|E135_ARATH0Glucan endo-1,3-beta-glucosidase 5 (Precursor)
trEMBLtr|I1M9P8|I1M9P8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G16830.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003358327486807-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH17,CBM43


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K19893GN5_6 EC:3.2.1.39 Starch and sucrose metabolism map00500


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000335s00017455.1PF00332.13Glyco_hydro_17293478.20E-76
Glyur000335s00017455.1PF07983.8X83674362.40E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.215
SRR1783600control5.341
SRR1783602moderate drought stress7.966
SRR1811619moderate drought stress7.814

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.768
DRR006520Root Summer glycyrrhizin high producing strain9.381
DRR006521Root Winter glycyrrhizin high producing strain3.147
DRR006522Root Winter glycyrrhizin high producing strain3.110
DRR006523Root Summer glycyrrhizin low producing strain15.140
DRR006524Root Summer glycyrrhizin low producing strain15.152
DRR006525Leaf Summer glycyrrhizin high producing strain2.752
DRR006526Leaf Summer glycyrrhizin high producing strain2.667

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)21.839
SRR2868004Drought Stress(Tissue:root)19.227
SRR2967015Control (Tissue:root)21.776

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.378
SRR9715740Leave4.185
SRR9715741Leave5.824
SRR9715739Root7.396
SRR9715742Root10.126
SRR9715743Root10.960

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.987
SRR8749028MeJA induced 9h8.216
SRR8749029MeJA induced 9h3.812
SRR8749030Uninduced4.827
SRR8749031Uninduced1.165
SRR8749032Uninduced1.021

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.664
SRR8400027Control-Root17.991

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved