Gene detail information of Glyur000335s00017464.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G49600.1 | 0 | ubiquitin-specific protease 26 |
| NR | XP_006596140.1 | 0 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 26-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9SCJ9|UBP26_ARATH | 0 | Ubiquitin carboxyl-terminal hydrolase 26 |
| trEMBL | tr|I1M9Q7|I1M9Q7_SOYBN | 0 | Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00335 | 121590 | 129835 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | USP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000335s00017464.1 | PF00443.24 | UCH | 118 | 458 | 1.30E-51 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.875 |
| SRR1783600 | control | 4.818 |
| SRR1783602 | moderate drought stress | 3.732 |
| SRR1811619 | moderate drought stress | 3.693 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.724 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.767 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.691 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.420 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.709 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.729 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.045 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 12.731 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.815 |
| SRR2967015 | Control (Tissue:root) | 12.071 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.866 |
| SRR9715740 | Leave | 7.011 |
| SRR9715741 | Leave | 5.968 |
| SRR9715739 | Root | 0.989 |
| SRR9715742 | Root | 6.739 |
| SRR9715743 | Root | 7.924 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.501 |
| SRR8749028 | MeJA induced 9h | 7.825 |
| SRR8749029 | MeJA induced 9h | 5.330 |
| SRR8749030 | Uninduced | 5.807 |
| SRR8749031 | Uninduced | 4.474 |
| SRR8749032 | Uninduced | 4.201 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 15.386 |
| SRR8400027 | Control-Root | 15.772 |