Gene detail information of Glyur000336s00018087.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17230.2 | 2.00E-97 | PHYTOENE SYNTHASE |
| NR | XP_004502211.1 | 0 | PREDICTED: phytoene synthase, chloroplastic-like [Cicer arietinum] |
| COG | YP_007108687.1 | 5.00E-82 | phytoene synthase [Geitlerinema sp. PCC 7407] |
| Swissprot | tr|P08196|PSY1_SOLLC | 3.00E-120 | Phytoene synthase 1, chloroplastic (Precursor) |
| trEMBL | tr|G7JA42|G7JA42_MEDTR | 0 | Squalene/phytoene synthase {ECO:0000313|EMBL:AES71870.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00336 | 4703 | 7680 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K02291 | crtB | EC:2.5.1.32 2.5.1.99 | Carotenoid biosynthesis | map00906 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000336s00018087.1 | PF00494.14 | SQS_PSY | 94 | 166 | 1.50E-09 |
| Glyur000336s00018087.1 | PF00494.14 | SQS_PSY | 146 | 315 | 1.50E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.106 |
| SRR1783600 | control | 0.069 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.096 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.105 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.085 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 37.957 |
| SRR2868004 | Drought Stress(Tissue:root) | 31.036 |
| SRR2967015 | Control (Tissue:root) | 11.767 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.048 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.808 |
| SRR8400027 | Control-Root | 4.053 |