Gene detail information of Glyur000336s00018090.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G42520.10P-loop containing nucleoside triphosphate hydrolases superfamily protein
NRXP_003538523.10PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Glycine max]
COGYP_004265464.19.00E-96DEAD/DEAH box helicase [Syntrophobotulus glycolicus DSM 8271]
Swissprottr|Q84W89|RH37_ARATH0DEAD-box ATP-dependent RNA helicase 37
trEMBLtr|I1LN13|I1LN13_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G36440.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003362055426193+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11594DDX3X, bel EC:3.6.4.13 RIG-I-like receptor signaling pathway map04622
Viral carcinogenesismap05203
Hepatitis Bmap05161


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000336s00018090.1PF00270.24DEAD1713523.70E-46
Glyur000336s00018090.1PF00271.26Helicase_C4275021.00E-26


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control21.114
SRR1783600control21.398
SRR1783602moderate drought stress21.129
SRR1811619moderate drought stress21.265

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain22.981
DRR006520Root Summer glycyrrhizin high producing strain22.701
DRR006521Root Winter glycyrrhizin high producing strain24.099
DRR006522Root Winter glycyrrhizin high producing strain23.297
DRR006523Root Summer glycyrrhizin low producing strain26.285
DRR006524Root Summer glycyrrhizin low producing strain26.281
DRR006525Leaf Summer glycyrrhizin high producing strain20.256
DRR006526Leaf Summer glycyrrhizin high producing strain20.181

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)46.304
SRR2868004Drought Stress(Tissue:root)37.642
SRR2967015Control (Tissue:root)36.513

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave30.977
SRR9715740Leave34.816
SRR9715741Leave35.271
SRR9715739Root23.673
SRR9715742Root40.407
SRR9715743Root35.813

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h32.515
SRR8749028MeJA induced 9h34.028
SRR8749029MeJA induced 9h21.431
SRR8749030Uninduced17.313
SRR8749031Uninduced11.859
SRR8749032Uninduced15.831

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root29.651
SRR8400027Control-Root31.694

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved