Gene detail information of Glyur000336s00018091.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G55270.1 | 4.00E-166 | Galactose oxidase/kelch repeat superfamily protein |
| NR | XP_004504335.1 | 0 | PREDICTED: F-box/kelch-repeat protein At1g55270-like [Cicer arietinum] |
| COG | YP_004368597.1 | 6.00E-07 | Kelch repeat type 1-containing protein [Marinithermus hydrothermalis DSM 14884] |
| Swissprot | tr|Q93W93|FBK22_ARATH | 0 | F-box/kelch-repeat protein At1g55270 |
| trEMBL | tr|G7LHY4|G7LHY4_MEDTR | 0 | Galactose oxidase/kelch repeat protein {ECO:0000313|EMBL:AET04178.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00336 | 27929 | 31567 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000336s00018091.1 | PF00646.28 | F-box | 78 | 116 | 5.00E-06 |
| Glyur000336s00018091.1 | PF01344.20 | Kelch_1 | 172 | 220 | 1.10E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.764 |
| SRR1783600 | control | 4.890 |
| SRR1783602 | moderate drought stress | 4.230 |
| SRR1811619 | moderate drought stress | 4.095 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.861 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.355 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.476 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.844 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.583 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.898 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.691 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.797 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.932 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.787 |
| SRR2967015 | Control (Tissue:root) | 11.716 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.708 |
| SRR9715740 | Leave | 7.009 |
| SRR9715741 | Leave | 9.887 |
| SRR9715739 | Root | 4.681 |
| SRR9715742 | Root | 7.054 |
| SRR9715743 | Root | 6.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.010 |
| SRR8749028 | MeJA induced 9h | 9.404 |
| SRR8749029 | MeJA induced 9h | 3.560 |
| SRR8749030 | Uninduced | 10.734 |
| SRR8749031 | Uninduced | 5.150 |
| SRR8749032 | Uninduced | 3.581 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.614 |
| SRR8400027 | Control-Root | 11.014 |