Gene detail information of Glyur000336s00018105.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G13930.13.00E-156Chalcone and stilbene synthase family protein
NRXP_003610851.10Chalcone synthase [Medicago truncatula]
COGYP_004652342.14.00E-40hypothetical protein PUV_15380 [Parachlamydia acanthamoebae UV-7]
Swissprottr|P51081|CHSA_PEA0Chalcone synthase 1A
trEMBLtr|F2Y9R1|F2Y9R1_GLYUR0Chalcone synthase 1 {ECO:0000313|EMBL:ADZ45298.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003368692596359-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00660CHS EC:2.3.1.74 Flavonoid biosynthesis map00941
Circadian rhythm - plantmap04712


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0009058  biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0016746  transferase activity, transferring acyl groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000336s00018105.2PF00195.14Chal_sti_synt_N4621.40E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control207.719
SRR1783600control204.924
SRR1783602moderate drought stress54.452
SRR1811619moderate drought stress53.665

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain29.922
DRR006520Root Summer glycyrrhizin high producing strain28.500
DRR006521Root Winter glycyrrhizin high producing strain3.386
DRR006522Root Winter glycyrrhizin high producing strain3.302
DRR006523Root Summer glycyrrhizin low producing strain15.978
DRR006524Root Summer glycyrrhizin low producing strain14.740
DRR006525Leaf Summer glycyrrhizin high producing strain79.872
DRR006526Leaf Summer glycyrrhizin high producing strain79.525

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)120.531
SRR2868004Drought Stress(Tissue:root)113.940
SRR2967015Control (Tissue:root)89.556

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave161.603
SRR9715740Leave17.031
SRR9715741Leave47.414
SRR9715739Root109.906
SRR9715742Root145.531
SRR9715743Root139.207

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h37.834
SRR8749028MeJA induced 9h46.994
SRR8749029MeJA induced 9h14.867
SRR8749030Uninduced232.328
SRR8749031Uninduced35.060
SRR8749032Uninduced51.109

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root107.566
SRR8400027Control-Root89.000

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved