Gene detail information of Glyur000338s00015557.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G05410.19.00E-143Transducin/WD40 repeat-like superfamily protein
NRXP_007147493.10hypothetical protein PHAVU_006G129100g [Phaseolus vulgaris]
COGYP_001658838.14.00E-25WD repeat-containing protein [Microcystis aeruginosa NIES-843]
Swissprottr|O24076|GBLP_MEDSA2.00E-19Guanine nucleotide-binding protein subunit beta-like protein
trEMBLtr|V7BNF5|V7BNF5_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW19487.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003381173316128+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000338s00015557.1PF00400.27WD401391720.0038
Glyur000338s00015557.1PF00400.27WD402062330.00019
Glyur000338s00015557.1PF00400.27WD402382754.10E-09
Glyur000338s00015557.1PF00400.27WD403233560.00037
Glyur000338s00015557.1PF00400.27WD404024340.034


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.409
SRR1783600control17.497
SRR1783602moderate drought stress13.347
SRR1811619moderate drought stress13.158

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.462
DRR006520Root Summer glycyrrhizin high producing strain14.178
DRR006521Root Winter glycyrrhizin high producing strain7.266
DRR006522Root Winter glycyrrhizin high producing strain7.209
DRR006523Root Summer glycyrrhizin low producing strain13.759
DRR006524Root Summer glycyrrhizin low producing strain14.696
DRR006525Leaf Summer glycyrrhizin high producing strain4.968
DRR006526Leaf Summer glycyrrhizin high producing strain5.114

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.904
SRR2868004Drought Stress(Tissue:root)10.346
SRR2967015Control (Tissue:root)8.702

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.631
SRR9715740Leave13.094
SRR9715741Leave5.935
SRR9715739Root8.553
SRR9715742Root17.488
SRR9715743Root15.064

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h19.565
SRR8749028MeJA induced 9h12.304
SRR8749029MeJA induced 9h11.274
SRR8749030Uninduced1.617
SRR8749031Uninduced0.666
SRR8749032Uninduced2.006

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.540
SRR8400027Control-Root12.519

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved