Gene detail information of Glyur000338s00015562.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G04885.10Glycosyl hydrolase family protein
NRXP_007147489.10hypothetical protein PHAVU_006G128800g [Phaseolus vulgaris]
COGYP_826247.18.00E-134glycoside hydrolase family 3 protein [Candidatus Solibacter usitatus Ellin6076]
Swissprottr|A5JTQ3|XYL2_MEDSV8.00E-28Alpha-L-arabinofuranosidase (Precursor)
trEMBLtr|V7BR40|V7BR40_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW19483.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003383828244307-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH3


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05349bglX EC:3.2.1.21 Starch and sucrose metabolism map00500
Cyanoamino acid metabolismmap00460
Phenylpropanoid biosynthesismap00940


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000338s00015562.1PF00933.16Glyco_hydro_3503791.20E-86
Glyur000338s00015562.1PF01915.17Glyco_hydro_3_C4184627.10E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.056
SRR1783600control3.161
SRR1783602moderate drought stress3.043
SRR1811619moderate drought stress3.077

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.924
DRR006520Root Summer glycyrrhizin high producing strain7.027
DRR006521Root Winter glycyrrhizin high producing strain2.332
DRR006522Root Winter glycyrrhizin high producing strain2.248
DRR006523Root Summer glycyrrhizin low producing strain9.234
DRR006524Root Summer glycyrrhizin low producing strain9.205
DRR006525Leaf Summer glycyrrhizin high producing strain10.295
DRR006526Leaf Summer glycyrrhizin high producing strain10.394

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)33.693
SRR2868004Drought Stress(Tissue:root)17.053
SRR2967015Control (Tissue:root)22.389

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.706
SRR9715740Leave7.240
SRR9715741Leave5.458
SRR9715739Root3.799
SRR9715742Root5.906
SRR9715743Root5.000

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.137
SRR8749028MeJA induced 9h10.780
SRR8749029MeJA induced 9h10.423
SRR8749030Uninduced3.321
SRR8749031Uninduced0.977
SRR8749032Uninduced1.908

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root9.865
SRR8400027Control-Root9.159

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved