Gene detail

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Gene detail information of Glyur000338s00015571.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G30500.2	8.00E-43	nuclear factor Y, subunit A7
NR	XP_003535083.1	5.25E-116	PREDICTED: nuclear transcription factor Y subunit A-7-like isoformX2 [Glycine max]
Swissprot	tr\|Q84JP1\|NFYA7_ARATH	2.00E-68	Nuclear transcription factor Y subunit A-7
trEMBL	tr\|K7LBF6\|K7LBF6_SOYBN	2.00E-116	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G02770.2}

Sequence

Transcript Sequence

>Glyur000338s00015571.1
CCTGAATTGTGTTAACAATGCTTGTTCTGCTTCCAGATTTGGACACTGGAGTACATGTGAATCAGAAAATCATGACTTCTTCTACGCATGATCTAACAGATAATGAAGCTGATGGACAGCAGCAGTCAGAATCACCGATGCAGCCTTTATCTGCAGATGGAATTTCTCATGCAGGTATTGGTACTCAGATTGTTCAGTATGCAGCACCTCCACAGCTTGGAACTGGGCATGCTATGGCACCACCTGCTTATCCATACCCAGATCCATACTACAGAAGCATCTTTGCTCCCTATGATGCACAACCTTATCCCCAACAACCACATCCAATGGTCCAACTTCAGTTAATGGGAATTCAGCAAGCAGGTGTTCCATTGCCAACTGATGCAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAGTATCATGGTATATTAAGACGCAGGCAGTCCCGTGCTAAAGCTGAATCAGAAAATAAAGCTGCAAGGAATAGAAAGCCATACTTGCATGAATCTCGACATCTGCATGCACTGAGAAGAGCAAGAGGATGCGGAGGTCGGTTTCTGAATTCAAAGAAAGATGAGAATCAACAGAATGAGGTCGCATCAACCGACAATTCGCTGTCCAATATCAATCTCAATTCCGATAAAAATGATCTTGCGCCGCCATCGGATAAAACATCATAAAATTACAGAAATGGTGATGCTGTAGACTACAAGGATCTGCTGTCCCTCTATATCATGAGACCAACCAATGACCTACCAACAGCAGCATCAGACAGATATCTTGCTGTTGTTTCATTCTGGCACTGTACAACCCCATAGGTATAGGTATAGGTTTTGTGTAGTAGGGTATGTTAGGGAGGTTGCAAGACAAAGCAAGTATAATGTAAAAAAATGAAGTGATTTAATCATATGTTGTTATCCCCAATGTGGTCCTTTGTAATTGTAGGTGAGATGTTTAATGTGAGTATTTCTTTGGAGGGATGTGTACTATTTCTCTAAAGGAAAACGTATTGTTGTAAAAGGATGTTGGCCTTCTAACTCTCTCTTTTTTACTCCCTTCCCCATGGAGTTGTGGAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00338	106337	108790	-

Gene family

Gene family	subfamily
Transcription Factors Family	NF-YA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component GO:0016602 CCAAT-binding factor complex molecular_function GO:0003677 DNA binding GO:0003700 transcription factor activity, sequence-specific DNA binding "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000338s00015571.1	PF02045.10	CBFB_NFYA	125	181	3.50E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.154
SRR1783600	control	28.324
SRR1783602	moderate drought stress	58.273
SRR1811619	moderate drought stress	57.900

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	51.516
DRR006520	Root Summer glycyrrhizin high producing strain	51.113
DRR006521	Root Winter glycyrrhizin high producing strain	113.845
DRR006522	Root Winter glycyrrhizin high producing strain	110.889
DRR006523	Root Summer glycyrrhizin low producing strain	59.639
DRR006524	Root Summer glycyrrhizin low producing strain	60.577
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.840
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.342

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	8.470
SRR2868004	Drought Stress(Tissue:root)	11.563
SRR2967015	Control (Tissue:root)	16.053

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	5.391
SRR9715740	Leave	12.256
SRR9715741	Leave	6.883
SRR9715739	Root	11.032
SRR9715742	Root	11.957
SRR9715743	Root	11.416

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.889
SRR8749028	MeJA induced 9h	7.673
SRR8749029	MeJA induced 9h	6.542
SRR8749030	Uninduced	9.608
SRR8749031	Uninduced	5.830
SRR8749032	Uninduced	6.019

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	28.955
SRR8400027	Control-Root	29.183