Gene detail

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Gene detail information of Glyur000338s00015579.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G30570.1	0	hercules receptor kinase 2
NR	KEH37058.1	0	malectin/receptor-like kinase family protein [Medicago truncatula]
COG	YP_004092358.1	3.00E-21	serine/threonine protein kinase with PASTA sensor(s) [Ethanoligenens harbinense YUAN-3]
Swissprot	tr\|Q9SA72\|Y1357_ARATH	0	Probable receptor-like protein kinase At1g30570 (Precursor)
trEMBL	tr\|A0A072V6S4\|A0A072V6S4_MEDTR	0	Malectin/receptor-like kinase family protein {ECO:0000313\|EMBL:KEH37058.1}

Sequence

Transcript Sequence

>Glyur000338s00015579.1
ATGATGGGTAAGGTCCTTGGAGAGGGACTATNGATTGTGCTAATTCTGGTGATAGTGAACACTACTGTAGAGGCTCAACCAAAGTCATTTCTTATAAATTGTGGTTCAAATTCTTCTGTAAATGTTGATGGNAGGAGATGGATTGGGGACATGGCCCCTAATAACAATGTCACCCTCAGCTCCTCTGGTGTTGCTGCTTCCACTGCCACATTAAGTGGCAATTCAATCTATGAGCCTCTTTACAGAACAGCCAGGATTTTCACAGCTTCTCTAAATTACACAATCAAAGAAGTTCAGGGAAGCNACTTTGTTAGGTTNCATTTCTGCCCCTTTGAGACTGGGNACTACAATGTGAATGAGTCCTCTTTTGGTATTGTGGTCAATGGTCTGAAACTGTTGTCAGAGTTTGATGTTCCAGGTAAGATATCCCACAAGAATGTGAACTTGCAGAATTCTGGAAAGAATTCTTCCACTTCATTCTTCTTGATTAAAGAGTATGTTCTNGCTGCCAATGATGATATGCTTGTGATTGAGTTTGTTCCANNCAGAAACTCATTTGGCTTCATCAATGCCATTGAGATTGTCCCAGTTGTGGGTGAGNTTTTTGCTGGCTCAGTCAGTAAAGTTGGTGGAGGTGGTGGGAACTTGAACTTGACCGGACGCGGGATGGAGACTATGTATCGGTTAAATGTTGGTGGTCCTGAGATTGAATCCAATCAGGATTCAGATCTTTGGAGGAATTGGGAAGTNGATTCTAGCTATATGATCACAGAAAATGCTGGTTCAGCAATTAAGAACAGTTCTAANATTACATATGCTTCCCTGAATGATACTTCTGTGGCTCCTCTNCTTGTGTATGAAACTGCAAGGGCAATGTCCAACACTCAAGTCTTGGACAAAAGGTTTAACATGTCATGGAAATTNGAAGTGGATCCTGATTTCGATTACGTGGTCCGGTTGCATTTCTGTGAGCTGGTGTATGATAAGGCGAATGAGAGGATATTCAGGATCTACATAAACAACAGGACAGCTGCGGACAATGTTGATGTTTTCGTTCGAGCAGGAGGGATGAATAAAGCATATCACCAGGATCATTTTGATTCCGGGTCCCCGAGGATTGACANGCTTTGGGTTCAACTGGGTCCTGATACCGCTGCTGGTGCTGCAGGAACTGATGCTCTCTTGAATGGTCTAGAGATTTTCAAGCTCAGTCGGAATGGGAATCTTGCCCATGTGGAGAGATACAACTCGGCTGGCAATTCAGGGAGCAAATCAAAAGCAAGAGTTATCTGGGTGGGAGTGGGAGCAGGNGTAGCTTCTGTGGCTATAATTGCTTGTATAGTTGCTCTTGTTTTCTGTTTCTGCAAAAGCAGGAGGAAAGAATCAAGTGATACCAAAAACAATCCTCTGGGTTGGCGACCTTTATTCCTGTATGGAGGAGCTGCTGCAAACAGCACTGTGGGTGCCAAGGGATCAGCAGGAACTCAGAAACTATATGGATCGGTGGCCTCAACCCGAGCTGGTAAACGGTTTACACTGGCAGAAATTAATGCTGCAACAAGTAACTTTGATGAGAGTTTGGTAATTGGAGTTGGAGGCTTTGGTAAGGTGTACAAGGGGGAGATCGATGACGGTGTCCTCGCTGCGATTAAGCGTGCCAACCCACAATCTGAGCAAGGCCTGGCCGAATTCGAGACAGAAATTGAGATGCTCTCCAAACTAAGACACAGGCATCTGGTGTCCTTGATTGGTTTCTGCGAAGAGAAGAATGAAATGATTTTGGTCTACGAGTACATGGCGAACGGAACTNTCAGAAGCCATCTATTTGGGAGCAATCTCCCTCCATTGACTTGGAAGCAGCGCCTAGAAGCTTGCATCGGCGCCGCGAGGGGACTTCACTACCTTCACACGGGAGCCGACCGCGGAATAATTCACAGGGATGTCAAGACAACCAACATATTACTAGATGAGAACTTTGTGGCCAAAATGTCTGATTTTGGTTTGTCAAAAGATGGTCCTGCCTTTGAACACACACATGTTAGCACTGCTGTGAAAGGAAGCTTTGGCTATCTAGACCCAGAGTACTTCAGAAGACAGCAATTGACTGAGAAATCAGATGTTTACTCTTTTGGGGTTGTGNTGTTTGAAGTTGTTTGTGCTAGAGCTGTGATAAACCCCACATTGCCTAAAGATCAGATCAACCTTGCAGAATGGGCAATGAGGTGGCAAAGGCAAAGATCACTTGAAAAGATCATTGACCCAAATCTCAAAGGAAACTATTGCCCAGAATCCTTGTCTAAGTTTGGGGAGATAGCAGAAAAATGCCTCGCTGACGANGGCAAGAGCCGCCCTACCATGGGGGAGGTGTTGTGGCACTTGGAGTATGTCTTGCAGCTACATGAAGCTTGGCTCAACATGGATAATAGTAATAGCACAGATACTTCCTTCTCTAGTAGTCAAGCTTTGACTTTGAGGGGTGTAAAAGATGATGGAGGAGTAGTAGAAGTGGTGCAAGAACCTTCAAGTCAAGATGAAGAGGCTGGTTTGGATGATGGAGTCCACAACAACAACATGGAGGAATCAAAGAAATGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00338	144917	147508	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.3.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000338s00015579.1	PF12819.2	Malectin_like	32	403	2.30E-53
Glyur000338s00015579.1	PF07714.12	Pkinase_Tyr	528	791	1.20E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.156
SRR1783600	control	4.179
SRR1783602	moderate drought stress	4.550
SRR1811619	moderate drought stress	4.540

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.743
DRR006520	Root Summer glycyrrhizin high producing strain	5.673
DRR006521	Root Winter glycyrrhizin high producing strain	0.815
DRR006522	Root Winter glycyrrhizin high producing strain	0.881
DRR006523	Root Summer glycyrrhizin low producing strain	5.414
DRR006524	Root Summer glycyrrhizin low producing strain	5.347
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.271
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.321

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	17.929
SRR2868004	Drought Stress(Tissue:root)	14.480
SRR2967015	Control (Tissue:root)	11.801

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.944
SRR9715740	Leave	2.108
SRR9715741	Leave	1.146
SRR9715739	Root	4.916
SRR9715742	Root	5.203
SRR9715743	Root	4.763

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.157
SRR8749028	MeJA induced 9h	6.116
SRR8749029	MeJA induced 9h	3.451
SRR8749030	Uninduced	5.135
SRR8749031	Uninduced	6.817
SRR8749032	Uninduced	4.366

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	13.364
SRR8400027	Control-Root	15.902