Gene detail information of Glyur000338s00015583.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G20930.13.00E-1206-phosphogluconate dehydrogenase family protein
NRXP_004486468.10PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial-like isoform X1 [Cicer arietinum]
COGYP_006380261.14.00E-793-hydroxyisobutyrate dehydrogenase [Advenella kashmirensis WT001]
Swissprottr|Q9SUC0|3HIDH_ARATH1.00E-149Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial (Precursor)
trEMBLtr|K7MB43|K7MB43_SOYBN03-hydroxyisobutyrate dehydrogenase {ECO:0000256|RuleBase:RU910714}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00338169971175237-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00020mmsB, HIBADH EC:1.1.1.31 Valine, leucine and isoleucine degradation map00280


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004616  phosphogluconate dehydrogenase (decarboxylating) activity

GO:0016491  oxidoreductase activity

GO:0051287  NAD binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000338s00015583.2PF03446.10NAD_binding_238931.30E-11
Glyur000338s00015583.2PF03446.10NAD_binding_21021473.80E-12
Glyur000338s00015583.2PF14833.1NAD_binding_111502563.70E-27


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.277
SRR1783600control4.435
SRR1783602moderate drought stress6.309
SRR1811619moderate drought stress5.804

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.299
DRR006520Root Summer glycyrrhizin high producing strain9.761
DRR006521Root Winter glycyrrhizin high producing strain13.151
DRR006522Root Winter glycyrrhizin high producing strain13.007
DRR006523Root Summer glycyrrhizin low producing strain10.063
DRR006524Root Summer glycyrrhizin low producing strain10.298
DRR006525Leaf Summer glycyrrhizin high producing strain4.998
DRR006526Leaf Summer glycyrrhizin high producing strain4.548

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.001
SRR2868004Drought Stress(Tissue:root)21.514
SRR2967015Control (Tissue:root)25.255

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.199
SRR9715740Leave7.611
SRR9715741Leave10.194
SRR9715739Root2.709
SRR9715742Root4.683
SRR9715743Root3.651

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.685
SRR8749028MeJA induced 9h7.498
SRR8749029MeJA induced 9h5.502
SRR8749030Uninduced14.165
SRR8749031Uninduced6.963
SRR8749032Uninduced10.744

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.407
SRR8400027Control-Root13.958

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved