Gene detail information of Glyur000339s00020804.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G28890.1 | 3.00E-72 | RING/U-box superfamily protein |
| NR | XP_006587536.1 | 0 | PREDICTED: E3 ubiquitin-protein ligase ATL42-like [Glycine max] |
| Swissprot | tr|Q5XF85|ATL42_ARATH | 5.00E-105 | E3 ubiquitin-protein ligase ATL42 (Precursor) |
| trEMBL | tr|I1L4L9|I1L4L9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G32670.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00339 | 63947 | 65278 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000339s00020804.1 | PF13639.1 | zf-RING_2 | 117 | 160 | 3.90E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.126 |
| SRR1783600 | control | 4.233 |
| SRR1783602 | moderate drought stress | 3.004 |
| SRR1811619 | moderate drought stress | 3.105 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.081 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.081 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.140 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.135 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 38.155 |
| SRR2868004 | Drought Stress(Tissue:root) | 41.702 |
| SRR2967015 | Control (Tissue:root) | 28.901 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.884 |
| SRR9715740 | Leave | 0.248 |
| SRR9715741 | Leave | 0.315 |
| SRR9715739 | Root | 0.769 |
| SRR9715742 | Root | 0.506 |
| SRR9715743 | Root | 0.835 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.832 |
| SRR8749028 | MeJA induced 9h | 36.563 |
| SRR8749029 | MeJA induced 9h | 19.218 |
| SRR8749030 | Uninduced | 17.112 |
| SRR8749031 | Uninduced | 18.493 |
| SRR8749032 | Uninduced | 7.137 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 27.657 |
| SRR8400027 | Control-Root | 15.590 |