Gene detail information of Glyur000339s00020806.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G28910.3 | 1.00E-76 | novel interactor of JAZ |
| NR | XP_004513024.1 | 0 | PREDICTED: ninja-family protein mc410-like isoform X3 [Cicer arietinum] |
| Swissprot | tr|Q53HY2|NINJA_TOBAC | 3.00E-138 | Ninja-family protein mc410 |
| trEMBL | tr|I1J803|I1J803_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G34820.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00339 | 68773 | 71768 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000339s00020806.1 | PF07897.6 | DUF1675 | 421 | 469 | 2.90E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 40.882 |
| SRR1783600 | control | 41.327 |
| SRR1783602 | moderate drought stress | 40.164 |
| SRR1811619 | moderate drought stress | 40.983 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 61.142 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 60.815 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 54.670 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 53.822 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 54.518 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 54.548 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 33.459 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 33.555 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 58.858 |
| SRR2868004 | Drought Stress(Tissue:root) | 64.571 |
| SRR2967015 | Control (Tissue:root) | 65.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 69.408 |
| SRR9715740 | Leave | 75.876 |
| SRR9715741 | Leave | 84.404 |
| SRR9715739 | Root | 22.232 |
| SRR9715742 | Root | 64.715 |
| SRR9715743 | Root | 56.041 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 62.343 |
| SRR8749028 | MeJA induced 9h | 61.054 |
| SRR8749029 | MeJA induced 9h | 53.376 |
| SRR8749030 | Uninduced | 33.475 |
| SRR8749031 | Uninduced | 22.199 |
| SRR8749032 | Uninduced | 23.065 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 51.933 |
| SRR8400027 | Control-Root | 44.898 |