Gene detail information of Glyur000339s00020809.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G28860.1 | 4.00E-58 | casein kinase I-like 4 |
| NR | XP_002514257.1 | 2.88E-166 | casein kinase, putative [Ricinus communis] |
| COG | YP_004862735.1 | 3.00E-08 | serine/threonine protein kinase [Candidatus Chloracidobacterium thermophilum B] |
| Swissprot | tr|P42158|KC1D_ARATH | 1.00E-52 | Casein kinase I isoform delta-like |
| trEMBL | tr|B9RKL3|B9RKL3_RICCO | 1.00E-166 | Casein kinase, putative {ECO:0000313|EMBL:EEF48211.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00339 | 86651 | 92031 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:3.1.1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000339s00020809.1 | PF00069.20 | Pkinase | 9 | 46 | 2.70E-05 |
| Glyur000339s00020809.1 | PF00069.20 | Pkinase | 55 | 116 | 6.80E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 35.162 |
| SRR1783600 | control | 35.253 |
| SRR1783602 | moderate drought stress | 40.016 |
| SRR1811619 | moderate drought stress | 39.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 40.675 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 41.092 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 29.375 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 28.724 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 45.573 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 46.586 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.759 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.800 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 43.094 |
| SRR2868004 | Drought Stress(Tissue:root) | 51.281 |
| SRR2967015 | Control (Tissue:root) | 44.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 25.916 |
| SRR9715740 | Leave | 22.849 |
| SRR9715741 | Leave | 31.391 |
| SRR9715739 | Root | 21.666 |
| SRR9715742 | Root | 43.942 |
| SRR9715743 | Root | 39.246 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 35.006 |
| SRR8749028 | MeJA induced 9h | 38.931 |
| SRR8749029 | MeJA induced 9h | 32.902 |
| SRR8749030 | Uninduced | 35.211 |
| SRR8749031 | Uninduced | 60.830 |
| SRR8749032 | Uninduced | 34.119 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 58.266 |
| SRR8400027 | Control-Root | 63.026 |