Gene detail information of Glyur000339s00020810.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G28850.1 | 4.00E-105 | xyloglucan endotransglucosylase/hydrolase 26 |
| NR | XP_007152888.1 | 0 | hypothetical protein PHAVU_004G168700g [Phaseolus vulgaris] |
| COG | YP_004641534.1 | 1.00E-06 | beta-glucanase [Paenibacillus mucilaginosus KNP414] |
| Swissprot | tr|Q9SVV2|XTH26_ARATH | 5.00E-131 | Probable xyloglucan endotransglucosylase/hydrolase protein 26 (Precursor) |
| trEMBL | tr|V7C3Z2|V7C3Z2_PHAVU | 0 | Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00339 | 93257 | 95507 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH16 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000339s00020810.1 | PF00722.16 | Glyco_hydro_16 | 28 | 200 | 1.10E-49 |
| Glyur000339s00020810.1 | PF06955.7 | XET_C | 230 | 279 | 1.20E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.424 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.301 |
| SRR2967015 | Control (Tissue:root) | 2.444 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.580 |
| SRR8749028 | MeJA induced 9h | 0.467 |
| SRR8749029 | MeJA induced 9h | 0.801 |
| SRR8749030 | Uninduced | 4.252 |
| SRR8749031 | Uninduced | 2.427 |
| SRR8749032 | Uninduced | 2.210 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.196 |
| SRR8400027 | Control-Root | 0.606 |