Gene detail information of Glyur000339s00020814.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G21350.1 | 4.00E-72 | plant U-box 8 |
| NR | XP_004504954.1 | 7.74E-141 | PREDICTED: U-box domain-containing protein 8-like [Cicer arietinum] |
| COG | YP_001958274.1 | 1.00E-12 | hypothetical protein Aasi_1218 [Candidatus Amoebophilus asiaticus 5a2] |
| Swissprot | tr|O81902|PUB8_ARATH | 4.00E-105 | U-box domain-containing protein 8 |
| trEMBL | tr|B7FK42|B7FK42_MEDTR | 3.00E-132 | Putative uncharacterized protein {ECO:0000313|EMBL:ACJ85127.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00339 | 112386 | 114242 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
| Ubiquitin Family | U_box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000339s00020814.1 | PF04564.10 | U-box | 6 | 72 | 2.90E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.361 |
| SRR1783600 | control | 4.057 |
| SRR1783602 | moderate drought stress | 5.613 |
| SRR1811619 | moderate drought stress | 5.947 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.760 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.280 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.497 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.208 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.699 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.739 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.448 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.439 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.884 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.105 |
| SRR2967015 | Control (Tissue:root) | 2.507 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.991 |
| SRR9715740 | Leave | 0.723 |
| SRR9715741 | Leave | 0.646 |
| SRR9715739 | Root | 2.739 |
| SRR9715742 | Root | 2.508 |
| SRR9715743 | Root | 1.928 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.567 |
| SRR8749028 | MeJA induced 9h | 1.741 |
| SRR8749029 | MeJA induced 9h | 1.789 |
| SRR8749030 | Uninduced | 1.146 |
| SRR8749031 | Uninduced | 1.987 |
| SRR8749032 | Uninduced | 0.925 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.713 |
| SRR8400027 | Control-Root | 1.434 |