Gene detail information of Glyur000340s00024364.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G35610.1 | 0 | xyloglucanase 113 |
| NR | AET03500.2 | 0 | nucleotide-diphospho-sugar transferase family protein [Medicago truncatula] |
| trEMBL | tr|G7L7U8|G7L7U8_MEDTR | 0 | Nucleotide-diphospho-sugar transferase family protein {ECO:0000313|EMBL:AET03500.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00340 | 62679 | 71213 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT77 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K20784 | XEG113 | EC:2.4.2.- | Other types of O-glycan biosynthesis | map00514 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000340s00024364.1 | PF03407.11 | Nucleotid_trans | 156 | 380 | 1.60E-55 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 30.106 |
| SRR1783600 | control | 29.932 |
| SRR1783602 | moderate drought stress | 23.236 |
| SRR1811619 | moderate drought stress | 23.185 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.519 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.222 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 22.987 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 22.518 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 33.167 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 32.613 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.974 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.861 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 56.842 |
| SRR2868004 | Drought Stress(Tissue:root) | 45.422 |
| SRR2967015 | Control (Tissue:root) | 45.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 12.183 |
| SRR9715740 | Leave | 15.165 |
| SRR9715741 | Leave | 15.531 |
| SRR9715739 | Root | 5.420 |
| SRR9715742 | Root | 17.731 |
| SRR9715743 | Root | 15.862 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.282 |
| SRR8749028 | MeJA induced 9h | 33.211 |
| SRR8749029 | MeJA induced 9h | 16.680 |
| SRR8749030 | Uninduced | 21.148 |
| SRR8749031 | Uninduced | 16.338 |
| SRR8749032 | Uninduced | 14.019 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 38.065 |
| SRR8400027 | Control-Root | 36.706 |