Gene detail information of Glyur000341s00020130.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G03550.1 | 2.00E-54 | RING/U-box superfamily protein |
| NR | XP_003517045.1 | 1.80E-171 | PREDICTED: E3 ubiquitin-protein ligase Os04g0590900-like [Glycine max] |
| COG | YP_004671660.1 | 4.00E-06 | hypothetical protein SNE_A12920 [Simkania negevensis Z] |
| Swissprot | tr|Q7XLY8|ATL41_ORYSJ | 2.00E-76 | E3 ubiquitin-protein ligase Os04g0590900 |
| trEMBL | tr|I1J4U6|I1J4U6_SOYBN | 7.00E-172 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G02140.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00341 | 18379 | 19554 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000341s00020130.1 | PF13639.1 | zf-RING_2 | 152 | 195 | 9.00E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.954 |
| SRR1783600 | control | 6.000 |
| SRR1783602 | moderate drought stress | 3.526 |
| SRR1811619 | moderate drought stress | 3.557 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.763 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.996 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.095 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.093 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.515 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.545 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.106 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.517 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.823 |
| SRR2967015 | Control (Tissue:root) | 5.705 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.534 |
| SRR9715740 | Leave | 3.308 |
| SRR9715741 | Leave | 4.024 |
| SRR9715739 | Root | 2.015 |
| SRR9715742 | Root | 2.976 |
| SRR9715743 | Root | 2.462 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.083 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.005 |
| SRR8749030 | Uninduced | 0.029 |
| SRR8749031 | Uninduced | 0.032 |
| SRR8749032 | Uninduced | 0.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.487 |
| SRR8400027 | Control-Root | 8.539 |