Gene detail information of Glyur000341s00020131.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G17920.1 | 2.00E-37 | RING/U-box superfamily protein |
| NR | XP_003616179.1 | 4.84E-91 | RING finger-like protein [Medicago truncatula] |
| Swissprot | tr|O49691|ATL29_ARATH | 6.00E-56 | RING-H2 finger protein ATL29 |
| trEMBL | tr|G7KFV0|G7KFV0_MEDTR | 2.00E-91 | Anaphase-promoting complex subunit 11 RING-H2 finger protein {ECO:0000313|EMBL:AES99137.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00341 | 22783 | 23685 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000341s00020131.1 | PF13639.1 | zf-RING_2 | 112 | 155 | 3.80E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.121 |
| SRR1783600 | control | 0.123 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.360 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.357 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.488 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.662 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.206 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.046 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.052 |
| SRR2967015 | Control (Tissue:root) | 0.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.037 |
| SRR9715740 | Leave | 0.088 |
| SRR9715741 | Leave | 0.109 |
| SRR9715739 | Root | 0.028 |
| SRR9715742 | Root | 0.003 |
| SRR9715743 | Root | 0.145 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.062 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.017 |
| SRR8749031 | Uninduced | 0.109 |
| SRR8749032 | Uninduced | 0.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.009 |
| SRR8400027 | Control-Root | 0.029 |