Gene detail information of Glyur000341s00020139.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G25960.10P-glycoprotein 2
NRXP_003533440.10PREDICTED: ABC transporter B family member 2-like [Glycine max]
COGYP_005367043.13.00E-114efflux ABC transporter permease/ATP-binding protein [Corallococcus coralloides DSM 2259]
Swissprottr|Q8LPK2|AB2B_ARATH0ABC transporter B family member 2 (Precursor)
trEMBLtr|I1L4Y7|I1L4Y7_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G33880.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003417989990078-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05658ABCB1, CD243 EC:3.6.3.44 ABC transporters map02010
Bile secretionmap04976
MicroRNAs in cancermap05206


Gene Ontology

biological_process

GO:0006810  transport

GO:0055085  transmembrane transport


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0005524  ATP binding

GO:0016887  ATPase activity

GO:0042626  ATPase activity, coupled to transmembrane movement of substances

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000341s00020139.1PF00664.18ABC_membrane581762.10E-12
Glyur000341s00020139.1PF00664.18ABC_membrane2344895.40E-36
Glyur000341s00020139.1PF00005.22ABC_tran5637111.00E-31
Glyur000341s00020139.1PF00664.18ABC_membrane86211348.10E-47
Glyur000341s00020139.1PF00005.22ABC_tran119913475.20E-35


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.034
SRR1783600control0.041
SRR1783602moderate drought stress0.009
SRR1811619moderate drought stress0.009

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.219
DRR006520Root Summer glycyrrhizin high producing strain0.199
DRR006521Root Winter glycyrrhizin high producing strain0.075
DRR006522Root Winter glycyrrhizin high producing strain0.073
DRR006523Root Summer glycyrrhizin low producing strain0.049
DRR006524Root Summer glycyrrhizin low producing strain0.050
DRR006525Leaf Summer glycyrrhizin high producing strain7.207
DRR006526Leaf Summer glycyrrhizin high producing strain7.283

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.041
SRR2868004Drought Stress(Tissue:root)1.111
SRR2967015Control (Tissue:root)1.326

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.430
SRR9715740Leave6.585
SRR9715741Leave4.338
SRR9715739Root0.001
SRR9715742Root0.418
SRR9715743Root0.336

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.156
SRR8749028MeJA induced 9h0.044
SRR8749029MeJA induced 9h0.027
SRR8749030Uninduced0.000
SRR8749031Uninduced0.000
SRR8749032Uninduced0.013

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.410
SRR8400027Control-Root0.615

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved