Gene detail information of Glyur000341s00020143.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G32330.18.00E-106heat shock transcription factor A1D
NRXP_004512501.10PREDICTED: heat shock factor protein HSF8-like isoform X1 [Cicer arietinum]
Swissprottr|Q40152|HSF8_SOLLC3.00E-167Heat shock factor protein HSF8
trEMBLtr|G7KDN6|G7KDN6_MEDTR0Heat shock transcription factor A3 {ECO:0000313|EMBL:AES95803.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00341121164125735+


Gene family

Gene familysubfamily
Transcription Factors FamilyHSF


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated

GO:0009408  response to heat


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0043565  sequence-specific DNA binding

"

Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000341s00020143.1PF00447.12HSF_DNA-bind351536.30E-31


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.919
SRR1783600control11.786
SRR1783602moderate drought stress16.508
SRR1811619moderate drought stress16.301

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain27.993
DRR006520Root Summer glycyrrhizin high producing strain27.954
DRR006521Root Winter glycyrrhizin high producing strain16.159
DRR006522Root Winter glycyrrhizin high producing strain15.422
DRR006523Root Summer glycyrrhizin low producing strain24.526
DRR006524Root Summer glycyrrhizin low producing strain24.043
DRR006525Leaf Summer glycyrrhizin high producing strain8.821
DRR006526Leaf Summer glycyrrhizin high producing strain9.891

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.246
SRR2868004Drought Stress(Tissue:root)18.571
SRR2967015Control (Tissue:root)19.064

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.090
SRR9715740Leave17.511
SRR9715741Leave13.685
SRR9715739Root9.108
SRR9715742Root17.387
SRR9715743Root16.655

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.543
SRR8749028MeJA induced 9h25.415
SRR8749029MeJA induced 9h17.707
SRR8749030Uninduced12.090
SRR8749031Uninduced14.564
SRR8749032Uninduced16.385

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.219
SRR8400027Control-Root20.349

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved