Gene detail information of Glyur000342s00013720.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G52520.1 | 4.00E-60 | FAR1-related sequence 6 |
| NR | XP_006598347.1 | 3.22E-177 | PREDICTED: uncharacterized protein LOC100796448 [Glycine max] |
| Swissprot | tr|Q9SSQ4|FRS6_ARATH | 2.00E-64 | Protein FAR1-RELATED SEQUENCE 6 |
| trEMBL | tr|I1MFY4|I1MFY4_SOYBN | 4.00E-133 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G13160.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00342 | 52150 | 60868 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | FAR1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000342s00013720.1 | PF03101.10 | FAR1 | 105 | 188 | 1.70E-18 |
| Glyur000342s00013720.1 | PF03101.10 | FAR1 | 420 | 504 | 4.20E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.250 |
| SRR1783600 | control | 3.885 |
| SRR1783602 | moderate drought stress | 4.092 |
| SRR1811619 | moderate drought stress | 4.267 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.549 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.281 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.776 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.615 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.329 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.678 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.524 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.828 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.211 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.873 |
| SRR2967015 | Control (Tissue:root) | 11.336 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.591 |
| SRR9715740 | Leave | 4.597 |
| SRR9715741 | Leave | 4.056 |
| SRR9715739 | Root | 0.760 |
| SRR9715742 | Root | 2.867 |
| SRR9715743 | Root | 2.971 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.523 |
| SRR8749028 | MeJA induced 9h | 7.770 |
| SRR8749029 | MeJA induced 9h | 4.273 |
| SRR8749030 | Uninduced | 3.425 |
| SRR8749031 | Uninduced | 4.203 |
| SRR8749032 | Uninduced | 2.317 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.758 |
| SRR8400027 | Control-Root | 9.013 |