Gene detail information of Glyur000342s00013731.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G49720.1 | 0 | glycosyl hydrolase 9A1 |
| NR | XP_004486415.1 | 0 | PREDICTED: endoglucanase 25-like [Cicer arietinum] |
| COG | YP_007159459.1 | 4.00E-66 | Cellulase [Anabaena cylindrica PCC 7122] |
| Swissprot | tr|Q38890|GUN25_ARATH | 0 | Endoglucanase 25 |
| trEMBL | tr|V7BNG5|V7BNG5_PHAVU | 0 | Endoglucanase {ECO:0000256|RuleBase:RU361166} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00342 | 124340 | 128240 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH9 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000342s00013731.1 | PF00759.14 | Glyco_hydro_9 | 97 | 551 | 4.50E-133 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 273.796 |
| SRR1783600 | control | 278.070 |
| SRR1783602 | moderate drought stress | 322.153 |
| SRR1811619 | moderate drought stress | 339.080 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 226.341 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 225.286 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 114.243 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 111.415 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 234.452 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 236.061 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 75.689 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 75.792 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 309.882 |
| SRR2868004 | Drought Stress(Tissue:root) | 297.681 |
| SRR2967015 | Control (Tissue:root) | 284.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 108.622 |
| SRR9715740 | Leave | 75.891 |
| SRR9715741 | Leave | 72.460 |
| SRR9715739 | Root | 234.180 |
| SRR9715742 | Root | 272.546 |
| SRR9715743 | Root | 261.684 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 159.491 |
| SRR8749028 | MeJA induced 9h | 215.561 |
| SRR8749029 | MeJA induced 9h | 149.684 |
| SRR8749030 | Uninduced | 124.676 |
| SRR8749031 | Uninduced | 43.470 |
| SRR8749032 | Uninduced | 67.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 356.463 |
| SRR8400027 | Control-Root | 427.453 |