Gene detail information of Glyur000343s00025689.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G53420.1 | 2.00E-36 | CCT motif family protein |
| NR | XP_004502639.1 | 1.00E-94 | PREDICTED: uncharacterized protein LOC101507417 isoform X1 [Cicer arietinum] |
| trEMBL | tr|G7J6V3|G7J6V3_MEDTR | 2.00E-92 | CCT motif protein {ECO:0000313|EMBL:AES72485.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00343 | 14787 | 21338 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Orphans |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000343s00025689.1 | PF06203.9 | CCT | 181 | 202 | 2.10E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 48.331 |
| SRR1783600 | control | 47.964 |
| SRR1783602 | moderate drought stress | 53.784 |
| SRR1811619 | moderate drought stress | 53.774 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 39.913 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 39.143 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 21.695 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.583 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.206 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.175 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 155.223 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 152.081 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.166 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.714 |
| SRR2967015 | Control (Tissue:root) | 10.242 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.390 |
| SRR9715740 | Leave | 2.455 |
| SRR9715741 | Leave | 3.776 |
| SRR9715739 | Root | 2.557 |
| SRR9715742 | Root | 10.418 |
| SRR9715743 | Root | 9.460 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.456 |
| SRR8749028 | MeJA induced 9h | 0.089 |
| SRR8749029 | MeJA induced 9h | 0.302 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.257 |
| SRR8749032 | Uninduced | 0.075 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 29.196 |
| SRR8400027 | Control-Root | 38.572 |