Gene detail information of Glyur000343s00025693.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G53430.10SET domain group 29
NRXP_004502638.10PREDICTED: histone-lysine N-methyltransferase ATX5-like [Cicer arietinum]
COGYP_551493.13.00E-09nuclear protein SET [Polaromonas sp. JS666]
Swissprottr|Q8GZ42|ATX5_ARATH0Histone-lysine N-methyltransferase ATX5
trEMBLtr|I1JYS9|I1JYS9_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G41500.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003434988459548+


Gene family

Gene familysubfamily
Transcription Factors FamilyPHD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000343s00025693.1PF00628.24PHD4094621.20E-08
Glyur000343s00025693.1PF13831.1PHD_26046311.70E-07
Glyur000343s00025693.1PF13832.1zf-HC5HC2H_26387509.10E-27
Glyur000343s00025693.1PF00856.23SET8849120.00025


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.113
SRR1783600control5.221
SRR1783602moderate drought stress8.756
SRR1811619moderate drought stress8.561

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.344
DRR006520Root Summer glycyrrhizin high producing strain9.861
DRR006521Root Winter glycyrrhizin high producing strain10.333
DRR006522Root Winter glycyrrhizin high producing strain10.296
DRR006523Root Summer glycyrrhizin low producing strain10.663
DRR006524Root Summer glycyrrhizin low producing strain10.103
DRR006525Leaf Summer glycyrrhizin high producing strain9.619
DRR006526Leaf Summer glycyrrhizin high producing strain9.671

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.496
SRR2868004Drought Stress(Tissue:root)16.720
SRR2967015Control (Tissue:root)17.224

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.684
SRR9715740Leave9.474
SRR9715741Leave9.666
SRR9715739Root1.125
SRR9715742Root10.600
SRR9715743Root7.899

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.925
SRR8749028MeJA induced 9h13.023
SRR8749029MeJA induced 9h12.809
SRR8749030Uninduced9.431
SRR8749031Uninduced12.775
SRR8749032Uninduced12.199

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.330
SRR8400027Control-Root12.788

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved