Gene detail information of Glyur000343s00025701.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G53110.1 | 2.00E-82 | RING/U-box superfamily protein |
| NR | XP_003602221.1 | 0 | RING finger protein [Medicago truncatula] |
| Swissprot | tr|P0CH02|AT21B_ARATH | 8.00E-68 | Putative RING-H2 finger protein ATL21B (Precursor) |
| trEMBL | tr|G7J6U0|G7J6U0_MEDTR | 0 | RING-H2 finger ATL21B-like protein, putative {ECO:0000313|EMBL:AES72472.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00343 | 162732 | 166510 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000343s00025701.1 | PF13639.1 | zf-RING_2 | 317 | 360 | 5.00E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.506 |
| SRR1783600 | control | 1.570 |
| SRR1783602 | moderate drought stress | 1.094 |
| SRR1811619 | moderate drought stress | 1.148 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.191 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.787 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.198 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.193 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.722 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.772 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.165 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.164 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.003 |
| SRR2868004 | Drought Stress(Tissue:root) | 16.957 |
| SRR2967015 | Control (Tissue:root) | 17.949 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.507 |
| SRR9715740 | Leave | 0.291 |
| SRR9715741 | Leave | 0.192 |
| SRR9715739 | Root | 0.976 |
| SRR9715742 | Root | 1.528 |
| SRR9715743 | Root | 1.846 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.342 |
| SRR8749028 | MeJA induced 9h | 0.755 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.287 |
| SRR8400027 | Control-Root | 1.901 |