Gene detail information of Glyur000343s00025703.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G31910.2 | 1.00E-135 | GHMP kinase family protein |
| NR | XP_004502634.1 | 0 | PREDICTED: probable phosphomevalonate kinase-like [Cicer arietinum] |
| COG | YP_004458672.1 | 1.00E-09 | GHMP kinase [Acidianus hospitalis W1] |
| trEMBL | tr|V7AWF5|V7AWF5_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW08556.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00343 | 171387 | 178583 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00938 | E2.7.4.2, mvaK2 | EC:2.7.4.2 | Terpenoid backbone biosynthesis | map00900 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000343s00025703.1 | PF00288.21 | GHMP_kinases_N | 215 | 287 | 6.30E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.704 |
| SRR1783600 | control | 17.673 |
| SRR1783602 | moderate drought stress | 13.452 |
| SRR1811619 | moderate drought stress | 13.640 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.998 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 34.824 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.003 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.948 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.012 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.843 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.711 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.527 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 47.246 |
| SRR2868004 | Drought Stress(Tissue:root) | 26.810 |
| SRR2967015 | Control (Tissue:root) | 25.034 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 13.412 |
| SRR9715740 | Leave | 19.882 |
| SRR9715741 | Leave | 11.873 |
| SRR9715739 | Root | 5.611 |
| SRR9715742 | Root | 16.426 |
| SRR9715743 | Root | 15.906 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.395 |
| SRR8749028 | MeJA induced 9h | 17.051 |
| SRR8749029 | MeJA induced 9h | 13.216 |
| SRR8749030 | Uninduced | 7.408 |
| SRR8749031 | Uninduced | 5.072 |
| SRR8749032 | Uninduced | 6.521 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 30.606 |
| SRR8400027 | Control-Root | 31.198 |