Gene detail information of Glyur000344s00030073.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G04040.10Patatin-like phospholipase family protein
NRXP_004514583.10PREDICTED: triacylglycerol lipase SDP1-like [Cicer arietinum]
COGYP_693301.13.00E-79hypothetical protein ABO_1581 [Alcanivorax borkumensis SK2]
Swissprottr|Q9LZA6|SDP1_ARATH0Triacylglycerol lipase SDP1
trEMBLtr|G7IDS5|G7IDS5_MEDTR0Triacylglycerol lipase SDP1 {ECO:0000313|EMBL:AES61676.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00344130390135030-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14674TGL4 EC:3.1.1.3 3.1.1.13 3.1.1.4 2.3.1.51 Steroid biosynthesis map00100
Glycerolipid metabolismmap00561
Glycerophospholipid metabolismmap00564
Ether lipid metabolismmap00565
Arachidonic acid metabolismmap00590
Linoleic acid metabolismmap00591
alpha-Linolenic acid metabolismmap00592


Gene Ontology

biological_process

GO:0006629  lipid metabolic process

GO:0008152  metabolic process



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000344s00030073.1PF11815.3DUF3336922265.80E-29
Glyur000344s00030073.1PF01734.17Patatin2334314.50E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.098
SRR1783600control9.022
SRR1783602moderate drought stress8.620
SRR1811619moderate drought stress8.616

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.336
DRR006520Root Summer glycyrrhizin high producing strain12.186
DRR006521Root Winter glycyrrhizin high producing strain9.849
DRR006522Root Winter glycyrrhizin high producing strain9.679
DRR006523Root Summer glycyrrhizin low producing strain14.991
DRR006524Root Summer glycyrrhizin low producing strain14.993
DRR006525Leaf Summer glycyrrhizin high producing strain3.352
DRR006526Leaf Summer glycyrrhizin high producing strain3.266

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)10.872
SRR2868004Drought Stress(Tissue:root)21.205
SRR2967015Control (Tissue:root)24.558

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.538
SRR9715740Leave5.275
SRR9715741Leave4.737
SRR9715739Root6.337
SRR9715742Root17.382
SRR9715743Root16.698

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.593
SRR8749028MeJA induced 9h25.135
SRR8749029MeJA induced 9h17.145
SRR8749030Uninduced13.243
SRR8749031Uninduced66.785
SRR8749032Uninduced44.311

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.594
SRR8400027Control-Root12.621

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved