Gene detail information of Glyur000345s00015647.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G16760.10acyl-CoA oxidase 1
NRXP_004508938.10PREDICTED: peroxisomal acyl-coenzyme A oxidase 1-like [Cicer arietinum]
COGYP_290295.19.00E-72hypothetical protein Tfu_2239 [Thermobifida fusca YX]
Swissprottr|O65202|ACOX1_ARATH0Peroxisomal acyl-coenzyme A oxidase 1
trEMBLtr|G7JHR0|G7JHR0_MEDTR0Acyl-coenzyme A oxidase {ECO:0000256|PIRNR:PIRNR000168}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00345715213883+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00232E1.3.3.6, ACOX1, ACOX3 EC:1.3.3.6 Fatty acid metabolism map01212
Fatty acid degradationmap00071
alpha-Linolenic acid metabolismmap00592
Biosynthesis of unsaturated fatty acidsmap01040
cAMP signaling pathwaymap04024
Peroxisomemap04146
PPAR signaling pathwaymap03320


Gene Ontology

biological_process

GO:0006631  fatty acid metabolic process

GO:0006635  fatty acid beta-oxidation

GO:0008152  metabolic process

GO:0055114  oxidation-reduction process


cellular_component

GO:0005777  peroxisome


molecular_function

GO:0003995  acyl-CoA dehydrogenase activity

GO:0003997  acyl-CoA oxidase activity

GO:0016627  oxidoreductase activity, acting on the CH-CH group of donors

GO:0050660  flavin adenine dinucleotide binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000345s00015647.1PF14749.1Acyl-CoA_ox_N171324.80E-32
Glyur000345s00015647.1PF02770.14Acyl-CoA_dh_M1341925.70E-10
Glyur000345s00015647.1PF01756.14ACOX4616421.10E-55


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.943
SRR1783600control9.145
SRR1783602moderate drought stress12.330
SRR1811619moderate drought stress12.684

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.633
DRR006520Root Summer glycyrrhizin high producing strain12.442
DRR006521Root Winter glycyrrhizin high producing strain50.747
DRR006522Root Winter glycyrrhizin high producing strain49.253
DRR006523Root Summer glycyrrhizin low producing strain12.673
DRR006524Root Summer glycyrrhizin low producing strain12.275
DRR006525Leaf Summer glycyrrhizin high producing strain9.419
DRR006526Leaf Summer glycyrrhizin high producing strain9.649

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)25.221
SRR2868004Drought Stress(Tissue:root)34.301
SRR2967015Control (Tissue:root)53.766

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.852
SRR9715740Leave12.562
SRR9715741Leave17.624
SRR9715739Root9.788
SRR9715742Root14.807
SRR9715743Root13.299

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.454
SRR8749028MeJA induced 9h42.544
SRR8749029MeJA induced 9h13.508
SRR8749030Uninduced49.885
SRR8749031Uninduced33.575
SRR8749032Uninduced34.659

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root26.891
SRR8400027Control-Root26.604

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved