Gene detail information of Glyur000345s00015652.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G52600.1 | 4.00E-17 | myb domain protein 82 |
| NR | AFK35547.1 | 1.66E-72 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9LTF7|MYB82_ARATH | 4.00E-20 | Transcription factor MYB82 |
| trEMBL | tr|I3S5K5|I3S5K5_LOTJA | 6.00E-73 | Uncharacterized protein {ECO:0000313|EMBL:AFK35547.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00345 | 46853 | 48133 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB-related |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000345s00015652.1 | PF00249.26 | Myb_DNA-binding | 11 | 69 | 4.70E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.246 |
| SRR1783600 | control | 0.225 |
| SRR1783602 | moderate drought stress | 0.127 |
| SRR1811619 | moderate drought stress | 0.114 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.102 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.180 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.803 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.269 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.771 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.807 |
| SRR2967015 | Control (Tissue:root) | 0.509 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.293 |
| SRR9715740 | Leave | 0.772 |
| SRR9715741 | Leave | 1.018 |
| SRR9715739 | Root | 0.034 |
| SRR9715742 | Root | 0.225 |
| SRR9715743 | Root | 0.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.071 |
| SRR8749030 | Uninduced | 0.101 |
| SRR8749031 | Uninduced | 0.131 |
| SRR8749032 | Uninduced | 0.015 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.628 |
| SRR8400027 | Control-Root | 1.287 |